Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P19990_001 | Banana | nucleus | 29.07 | 78.12 |
| GSMUA_Achr3P01370_001 | Banana | nucleus | 26.74 | 74.19 |
| GSMUA_Achr5P21090_001 | Banana | nucleus | 38.08 | 71.98 |
| GSMUA_AchrUn_... | Banana | nucleus | 57.85 | 70.82 |
| CDX85422 | Canola | nucleus | 36.63 | 68.85 |
| GSMUA_Achr11P... | Banana | nucleus | 50.0 | 65.65 |
| CDX86220 | Canola | nucleus | 36.63 | 65.28 |
| GSMUA_Achr8P10800_001 | Banana | nucleus | 48.26 | 64.84 |
| GSMUA_Achr9P16640_001 | Banana | nucleus | 46.8 | 61.92 |
| GSMUA_Achr3P12730_001 | Banana | nucleus | 29.36 | 57.71 |
| GSMUA_Achr8P29910_001 | Banana | nucleus | 44.48 | 56.88 |
| GSMUA_Achr11P... | Banana | nucleus | 43.02 | 56.06 |
| GSMUA_Achr10P... | Banana | nucleus | 28.2 | 55.43 |
| PGSC0003DMT400011745 | Potato | nucleus | 37.5 | 55.13 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.15 | 54.31 |
| Solyc12g099130.1.1 | Tomato | nucleus | 36.92 | 54.04 |
| PGSC0003DMT400011750 | Potato | nucleus | 36.05 | 53.91 |
| AT1G48000.1 | Thale cress | nucleus | 37.21 | 52.67 |
| Solyc12g099120.1.1 | Tomato | nucleus | 37.79 | 52.63 |
| GSMUA_Achr1P21020_001 | Banana | nucleus | 29.07 | 51.28 |
| GSMUA_Achr1P24960_001 | Banana | nucleus | 38.95 | 49.63 |
| Solyc01g057910.2.1 | Tomato | nucleus | 40.41 | 48.43 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 42.73 | 48.04 |
| PGSC0003DMT400022600 | Potato | nucleus | 40.7 | 47.14 |
| GSMUA_Achr6P27290_001 | Banana | nucleus | 26.45 | 46.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.34 | 45.45 |
| GSMUA_Achr1P27270_001 | Banana | nucleus | 25.87 | 45.41 |
| Bra001202.1-P | Field mustard | nucleus | 40.12 | 45.39 |
| Solyc05g053330.2.1 | Tomato | nucleus | 41.86 | 45.28 |
| PGSC0003DMT400011748 | Potato | nucleus | 38.37 | 44.75 |
| KRH02414 | Soybean | nucleus | 41.28 | 44.1 |
| Solyc12g099140.1.1 | Tomato | nucleus | 38.37 | 44.0 |
| PGSC0003DMT400069841 | Potato | nucleus | 41.28 | 43.83 |
| Bra020624.1-P | Field mustard | nucleus | 40.41 | 43.71 |
| CDY05611 | Canola | nucleus | 40.41 | 43.71 |
| CDY33891 | Canola | nucleus | 40.41 | 43.71 |
| Os01t0298400-01 | Rice | extracellular, nucleus | 37.21 | 43.69 |
| KRH36928 | Soybean | nucleus | 42.73 | 43.24 |
| GSMUA_Achr7P05570_001 | Banana | nucleus | 34.01 | 43.01 |
| GSMUA_Achr8P18460_001 | Banana | nucleus | 31.1 | 42.97 |
| CDY24688 | Canola | nucleus | 39.83 | 42.95 |
| CDY05270 | Canola | nucleus | 40.12 | 42.86 |
| KRH50671 | Soybean | nucleus | 40.41 | 42.77 |
| Bra010022.1-P | Field mustard | nucleus | 40.12 | 42.72 |
| Bra010021.1-P | Field mustard | nucleus | 40.12 | 42.72 |
| AT5G49620.2 | Thale cress | nucleus | 39.83 | 42.68 |
| KRG97314 | Soybean | nucleus | 42.15 | 42.52 |
| AT3G06490.1 | Thale cress | nucleus | 39.83 | 42.41 |
| Bra029582.1-P | Field mustard | nucleus | 39.53 | 42.24 |
| CDY34949 | Canola | nucleus | 39.24 | 42.19 |
| CDX99864 | Canola | nucleus | 39.24 | 42.19 |
| Bra040274.1-P | Field mustard | nucleus | 39.24 | 42.19 |
| TraesCS3D01G413700.1 | Wheat | nucleus | 35.47 | 41.64 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 37.21 | 39.63 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 31.98 | 39.57 |
| TraesCS1A01G076200.1 | Wheat | nucleus | 37.21 | 39.51 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 37.21 | 39.38 |
| GSMUA_Achr3P08370_001 | Banana | nucleus | 32.85 | 39.37 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 35.17 | 39.29 |
| EES00624 | Sorghum | nucleus | 34.88 | 39.22 |
| CDY70282 | Canola | nucleus | 33.43 | 39.12 |
| TraesCS3B01G453300.1 | Wheat | nucleus | 34.88 | 39.09 |
| TraesCS1B01G094500.1 | Wheat | nucleus | 36.92 | 38.96 |
| Zm00001d040594_P001 | Maize | nucleus | 34.01 | 38.61 |
| GSMUA_Achr2P22640_001 | Banana | nucleus | 32.27 | 38.01 |
| GSMUA_Achr3P21060_001 | Banana | nucleus | 33.14 | 37.62 |
| GSMUA_Achr6P09760_001 | Banana | nucleus | 33.43 | 37.34 |
| Zm00001d009066_P001 | Maize | nucleus | 34.01 | 36.79 |
| GSMUA_Achr10P... | Banana | nucleus | 22.67 | 36.79 |
| GSMUA_Achr2P16200_001 | Banana | nucleus | 21.8 | 36.59 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 34.88 | 36.25 |
| GSMUA_Achr4P29230_001 | Banana | nucleus | 21.22 | 35.78 |
| GSMUA_Achr9P28370_001 | Banana | nucleus | 22.09 | 35.51 |
| GSMUA_Achr11P... | Banana | nucleus | 32.27 | 35.24 |
| GSMUA_Achr6P15370_001 | Banana | nucleus | 21.22 | 34.93 |
| GSMUA_Achr11P... | Banana | nucleus | 21.22 | 34.27 |
| GSMUA_Achr10P... | Banana | nucleus | 22.09 | 33.63 |
| GSMUA_Achr5P28350_001 | Banana | nucleus | 22.38 | 32.49 |
| GSMUA_Achr8P02640_001 | Banana | nucleus | 22.09 | 32.2 |
| GSMUA_Achr11P... | Banana | nucleus | 21.51 | 32.17 |
| CDX74100 | Canola | nucleus | 31.4 | 32.05 |
| GSMUA_Achr8P12710_001 | Banana | nucleus | 21.51 | 32.03 |
| GSMUA_Achr10P... | Banana | nucleus | 21.8 | 31.78 |
| GSMUA_Achr11P... | Banana | nucleus | 21.8 | 31.12 |
| GSMUA_Achr1P03450_001 | Banana | nucleus | 21.51 | 30.45 |
| GSMUA_Achr8P34340_001 | Banana | nucleus | 20.93 | 29.39 |
| GSMUA_Achr7P18200_001 | Banana | nucleus | 20.35 | 29.05 |
| CDY58600 | Canola | nucleus | 18.02 | 19.2 |
| GSMUA_Achr9P07000_001 | Banana | nucleus | 38.95 | 10.66 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P20830_001 | EnsemblPlants:GSMUA_Achr11T20830_001 | EnsemblPlantsGene:GSMUA_Achr11G20830_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF921 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002957B2C | UniProt:M0RU13 | MapMan:15.5.2.1 | : | : |
Description
Transcription factor (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G20830_001]
Coordinates
chr11:-:21701206..21702771
Molecular Weight (calculated)
38064.4 Da
IEP (calculated)
6.841
GRAVY (calculated)
-0.607
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFHETTCGS AIPPSEEEMD LRRGPWTVEE DVVLVDYIAV HGEGRWNSLA RCAGLRRTGK SCRLRWLNYL RPDVRRGNIT PEEQLLILEL HSRWGNRWSK
101: IAQHLPGRTD NEIKNYWRTR VQKHAKQLKC DVNSKQFKDV MRYLWIPRLV ERIRAASGNS TVSPATSHRP EDPATELARV KLSSETSSAA GSSSSDSFGM
201: HYFSPPRVSD GFPTASMQGC EDNKGDVTGP TKLSSETSSA AGSSSSDSFG IHYFSPPRVS DGFPAASMQG CEDNIGDVTG RTDFTTACWS ESLPSSNSGG
301: YADLGLTNLD QDRELMLDLH VHQVEVSISL TVRGSKCSSM NATR
101: IAQHLPGRTD NEIKNYWRTR VQKHAKQLKC DVNSKQFKDV MRYLWIPRLV ERIRAASGNS TVSPATSHRP EDPATELARV KLSSETSSAA GSSSSDSFGM
201: HYFSPPRVSD GFPTASMQGC EDNKGDVTGP TKLSSETSSA AGSSSSDSFG IHYFSPPRVS DGFPAASMQG CEDNIGDVTG RTDFTTACWS ESLPSSNSGG
301: YADLGLTNLD QDRELMLDLH VHQVEVSISL TVRGSKCSSM NATR
001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
Arabidopsis Description
AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.