Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21597961
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G094500.1 | Wheat | nucleus | 98.15 | 97.55 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 97.22 | 97.52 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 94.14 | 93.85 |
| CDX85422 | Canola | nucleus | 36.42 | 64.48 |
| CDX86220 | Canola | nucleus | 36.42 | 61.14 |
| PGSC0003DMT400011745 | Potato | nucleus | 37.35 | 51.71 |
| PGSC0003DMT400011750 | Potato | nucleus | 35.8 | 50.43 |
| Solyc12g099130.1.1 | Tomato | nucleus | 35.8 | 49.36 |
| Solyc12g099120.1.1 | Tomato | nucleus | 37.35 | 48.99 |
| AT1G48000.1 | Thale cress | nucleus | 36.42 | 48.56 |
| Solyc01g057910.2.1 | Tomato | nucleus | 41.67 | 47.04 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 43.83 | 46.41 |
| PGSC0003DMT400022600 | Potato | nucleus | 41.67 | 45.45 |
| Bra001202.1-P | Field mustard | nucleus | 41.67 | 44.41 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 41.98 | 44.16 |
| TraesCS3A01G229500.1 | Wheat | nucleus | 28.09 | 43.33 |
| TraesCS5A01G087100.1 | Wheat | nucleus | 37.04 | 43.17 |
| CDY24688 | Canola | nucleus | 42.28 | 42.95 |
| PGSC0003DMT400011748 | Potato | nucleus | 38.89 | 42.71 |
| TraesCS4A01G124900.1 | Wheat | nucleus | 41.98 | 42.63 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 37.96 | 42.56 |
| Bra029582.1-P | Field mustard | nucleus | 42.28 | 42.55 |
| CDY05270 | Canola | nucleus | 42.28 | 42.55 |
| Solyc12g099140.1.1 | Tomato | nucleus | 39.2 | 42.33 |
| Bra040274.1-P | Field mustard | nucleus | 41.67 | 42.19 |
| CDX99864 | Canola | nucleus | 41.67 | 42.19 |
| CDY34949 | Canola | nucleus | 41.67 | 42.19 |
| CDY05611 | Canola | nucleus | 41.05 | 41.82 |
| CDY33891 | Canola | nucleus | 41.05 | 41.82 |
| Bra020624.1-P | Field mustard | nucleus | 41.05 | 41.82 |
| AT3G06490.1 | Thale cress | nucleus | 41.36 | 41.49 |
| AT5G49620.2 | Thale cress | nucleus | 41.05 | 41.43 |
| KRH02414 | Soybean | nucleus | 41.05 | 41.3 |
| Solyc05g053330.2.1 | Tomato | nucleus | 40.43 | 41.2 |
| KRH50671 | Soybean | nucleus | 41.05 | 40.92 |
| Bra010022.1-P | Field mustard | nucleus | 40.43 | 40.56 |
| Bra010021.1-P | Field mustard | nucleus | 40.43 | 40.56 |
| PGSC0003DMT400069841 | Potato | nucleus | 39.51 | 39.51 |
| KRH36928 | Soybean | nucleus | 39.81 | 37.94 |
| KRG97314 | Soybean | nucleus | 39.81 | 37.83 |
| TraesCS1A01G406600.1 | Wheat | mitochondrion | 29.01 | 37.75 |
| GSMUA_Achr11P... | Banana | nucleus | 39.51 | 37.21 |
| CDY70282 | Canola | nucleus | 32.72 | 36.05 |
| TraesCS2A01G097200.1 | Wheat | nucleus | 35.49 | 35.28 |
| TraesCS5A01G083100.1 | Wheat | nucleus | 25.0 | 34.18 |
| TraesCS3A01G044700.1 | Wheat | nucleus | 35.8 | 33.53 |
| TraesCS4A01G173300.2 | Wheat | nucleus | 24.38 | 33.19 |
| TraesCS2A01G363800.1 | Wheat | nucleus | 26.23 | 32.69 |
| TraesCS5A01G512700.1 | Wheat | nucleus | 25.0 | 32.66 |
| TraesCS3A01G535100.1 | Wheat | nucleus | 25.0 | 31.15 |
| TraesCS6A01G227700.1 | Wheat | nucleus | 26.23 | 31.02 |
| CDX74100 | Canola | nucleus | 31.48 | 30.27 |
| TraesCS1A01G042700.1 | Wheat | nucleus | 24.38 | 30.04 |
| CDY58600 | Canola | nucleus | 21.91 | 21.98 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G076200.1 | EnsemblPlantsGene:TraesCS1A01G076200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF921 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:58946424..58947663
Molecular Weight (calculated)
35539.6 Da
IEP (calculated)
6.420
GRAVY (calculated)
-0.456
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMDKEYYKA CMGMEALPMS PAGFSAVTTE AAMAVATASE DEGDLKRGPW TAEEDMLLVD YISKHGEGRW NSLARCAGLR RTGKSCRLRW LNYLRPDVRR
101: GNITPEEQLL ILDLHSRWGN RWSKIAQRLP GRTDNEVKNY WRTRVQKHAK QLHCDVNSDR FRDVVRQVWM PRLLERIQAE SSSSSAAAAA GVGVPALTRA
201: MSSPAGASQY HCFDHASSGG PSRKVAVTMS PDTSSTLRSS LSPAETSHGA HFPAWGAATA TANVDGSMMQ CAGREGGAIG GDQYVIHGDS LSGSWSELLA
301: ATDIPDFEFG NFDDNLWSLE DIYC
101: GNITPEEQLL ILDLHSRWGN RWSKIAQRLP GRTDNEVKNY WRTRVQKHAK QLHCDVNSDR FRDVVRQVWM PRLLERIQAE SSSSSAAAAA GVGVPALTRA
201: MSSPAGASQY HCFDHASSGG PSRKVAVTMS PDTSSTLRSS LSPAETSHGA HFPAWGAATA TANVDGSMMQ CAGREGGAIG GDQYVIHGDS LSGSWSELLA
301: ATDIPDFEFG NFDDNLWSLE DIYC
001: MDEKGRSLKN NNMEDEMDLK RGPWTAEEDF KLMNYIATNG EGRWNSLSRC AGLQRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
Arabidopsis Description
MYB108Transcription factor MYB108 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDE1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.