Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24688 | Canola | nucleus | 88.54 | 89.66 |
| CDY05270 | Canola | nucleus | 88.54 | 88.82 |
| Bra029582.1-P | Field mustard | nucleus | 88.24 | 88.51 |
| GSMUA_Achr4P19990_001 | Banana | nucleus | 28.79 | 72.66 |
| GSMUA_Achr5P21090_001 | Banana | nucleus | 38.08 | 67.58 |
| AT5G49620.2 | Thale cress | nucleus | 66.25 | 66.67 |
| GSMUA_Achr3P12730_001 | Banana | nucleus | 29.72 | 54.86 |
| GSMUA_Achr8P10800_001 | Banana | nucleus | 43.03 | 54.3 |
| GSMUA_Achr11P... | Banana | nucleus | 43.65 | 53.82 |
| GSMUA_Achr11P... | Banana | nucleus | 43.34 | 53.03 |
| GSMUA_Achr9P16640_001 | Banana | nucleus | 42.41 | 52.69 |
| AT1G48000.1 | Thale cress | nucleus | 39.63 | 52.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.41 | 51.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.27 | 50.89 |
| GSMUA_Achr1P24960_001 | Banana | nucleus | 41.8 | 50.0 |
| GSMUA_Achr8P29910_001 | Banana | nucleus | 41.49 | 49.81 |
| AT2G47190.1 | Thale cress | nucleus | 39.32 | 46.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.01 | 45.82 |
| TraesCS4D01G181100.1 | Wheat | nucleus | 44.89 | 45.45 |
| TraesCS4B01G179500.1 | Wheat | nucleus | 44.58 | 45.28 |
| TraesCS4A01G124900.1 | Wheat | nucleus | 44.58 | 45.14 |
| TraesCSU01G069000.1 | Wheat | nucleus | 39.94 | 44.48 |
| AT3G01530.1 | Thale cress | nucleus | 28.17 | 44.17 |
| TraesCS3D01G413700.1 | Wheat | nucleus | 39.94 | 44.03 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 39.94 | 44.03 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 39.94 | 44.03 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 39.32 | 43.94 |
| TraesCS5D01G099100.1 | Wheat | nucleus | 37.15 | 43.17 |
| TraesCS5A01G087100.1 | Wheat | nucleus | 37.15 | 43.17 |
| TraesCS5B01G093000.1 | Wheat | nucleus | 37.15 | 43.17 |
| GSMUA_Achr7P05570_001 | Banana | nucleus | 35.91 | 42.65 |
| HORVU5Hr1G022690.1 | Barley | nucleus | 37.15 | 42.55 |
| AT3G27810.1 | Thale cress | nucleus | 29.72 | 42.48 |
| EES00624 | Sorghum | nucleus | 39.94 | 42.16 |
| TraesCS3B01G453300.1 | Wheat | nucleus | 39.94 | 42.02 |
| KXG39500 | Sorghum | nucleus | 43.65 | 41.96 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 35.91 | 41.73 |
| Zm00001d028930_P001 | Maize | nucleus | 43.34 | 41.67 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 39.63 | 41.56 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 41.49 | 41.49 |
| TraesCS1A01G076200.1 | Wheat | nucleus | 41.49 | 41.36 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 41.49 | 41.23 |
| AT5G40350.1 | Thale cress | nucleus | 27.24 | 41.12 |
| Zm00001d040594_P001 | Maize | nucleus | 38.39 | 40.92 |
| TraesCS1B01G094500.1 | Wheat | nucleus | 41.18 | 40.8 |
| Zm00001d047579_P001 | Maize | nucleus | 43.03 | 39.83 |
| GSMUA_Achr11P... | Banana | nucleus | 42.41 | 39.83 |
| GSMUA_Achr3P08370_001 | Banana | nucleus | 34.67 | 39.02 |
| HORVU4Hr1G052490.5 | Barley | nucleus, plastid | 44.27 | 38.75 |
| AT1G68320.1 | Thale cress | nucleus | 34.06 | 38.46 |
| Zm00001d009066_P001 | Maize | nucleus | 37.46 | 38.05 |
| KXG36991 | Sorghum | nucleus | 40.25 | 38.01 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 38.7 | 37.76 |
| Zm00001d007191_P001 | Maize | nucleus | 39.94 | 37.18 |
| TraesCS2A01G097200.1 | Wheat | nucleus | 36.22 | 35.89 |
| TraesCS2D01G096000.1 | Wheat | nucleus | 36.22 | 35.67 |
| EES17207 | Sorghum | nucleus | 37.15 | 35.61 |
| TraesCS2B01G112600.1 | Wheat | nucleus | 36.53 | 35.54 |
| Zm00001d030644_P001 | Maize | nucleus | 38.39 | 35.33 |
| Zm00001d048647_P001 | Maize | nucleus | 38.39 | 35.23 |
| AT5G59780.3 | Thale cress | nucleus | 25.08 | 34.47 |
| Zm00001d010933_P001 | Maize | nucleus | 39.01 | 34.33 |
| AT3G24310.1 | Thale cress | nucleus | 28.17 | 33.83 |
| EES10257 | Sorghum | nucleus | 37.77 | 33.42 |
| Os05t0132700-01 | Rice | nucleus | 21.67 | 32.56 |
| AT4G13480.1 | Thale cress | nucleus | 26.01 | 32.18 |
| AT1G25340.3 | Thale cress | nucleus | 30.65 | 32.14 |
| Zm00001d024726_P001 | Maize | nucleus | 35.29 | 32.11 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 35.6 | 31.68 |
| AT3G46130.1 | Thale cress | nucleus | 25.08 | 31.4 |
| AT3G53200.1 | Thale cress | nucleus | 22.91 | 31.09 |
| KXG21220 | Sorghum | nucleus | 38.39 | 30.54 |
| Zm00001d024725_P001 | Maize | nucleus | 38.08 | 30.3 |
| AT3G30210.1 | Thale cress | nucleus | 25.08 | 29.35 |
| KXG21221 | Sorghum | nucleus | 37.77 | 25.58 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:819827 | UniProt:A0A178V5C1 | ProteinID:AAG51322.1 | ProteinID:AEE74402.1 |
| EMBL:AF262733 | ArrayExpress:AT3G06490 | EnsemblPlantsGene:AT3G06490 | RefSeq:AT3G06490 | TAIR:AT3G06490 | RefSeq:AT3G06490-TAIR-G |
| EnsemblPlants:AT3G06490.1 | TAIR:AT3G06490.1 | EMBL:AY519584 | Unigene:At.14823 | GO:GO:0000981 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006357 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009620 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 |
| GO:GO:0009723 | GO:GO:0009737 | GO:GO:0009753 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | Symbol:MYB108 | InterPro:Myb_dom | RefSeq:NP_187301.1 |
| ProteinID:OAP01400.1 | PFAM:PF00249 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF743 | UniProt:Q9LDE1 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000009D3A4 | SEG:seg | : | : | : |
Description
MYB108Transcription factor MYB108 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDE1]
Coordinates
chr3:+:2003393..2006727
Molecular Weight (calculated)
37021.6 Da
IEP (calculated)
4.663
GRAVY (calculated)
-0.865
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEKGRSLKN NNMEDEMDLK RGPWTAEEDF KLMNYIATNG EGRWNSLSRC AGLQRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.