CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030644_P001	Maize	nucleus	78.34	75.21
CDX85422	Canola	nucleus	34.12	62.84
TraesCS5B01G093000.1	Wheat	nucleus	51.04	61.87
TraesCS5D01G099100.1	Wheat	nucleus	50.45	61.15
TraesCS5A01G087100.1	Wheat	nucleus	50.45	61.15
HORVU5Hr1G022690.1	Barley	nucleus	50.74	60.64
CDX86220	Canola	nucleus	34.72	60.62
Os11t0684000-01	Rice	nucleus	48.96	57.89
PGSC0003DMT400011745	Potato	nucleus	34.42	49.57
PGSC0003DMT400011750	Potato	nucleus	33.53	49.13
Solyc12g099130.1.1	Tomato	nucleus	34.12	48.94
Solyc12g099120.1.1	Tomato	nucleus	34.72	47.37
VIT_05s0077g00500.t01	Wine grape	nucleus	42.73	47.06
Solyc01g057910.2.1	Tomato	nucleus	39.47	46.34
EES10257	Sorghum	nucleus	49.85	46.03
AT1G48000.1	Thale cress	nucleus	32.94	45.68
PGSC0003DMT400022600	Potato	nucleus	38.58	43.77
KRH02414	Soybean	nucleus	41.54	43.48
EES00624	Sorghum	nucleus	38.28	42.16
KRH50671	Soybean	nucleus	40.36	41.85
PGSC0003DMT400011748	Potato	nucleus	35.91	41.02
KRH36928	Soybean	nucleus	41.25	40.88
Solyc05g053330.2.1	Tomato	nucleus	37.98	40.25
KRG97314	Soybean	nucleus	40.36	39.88
PGSC0003DMT400069841	Potato	nucleus	37.98	39.51
AT5G49620.2	Thale cress	nucleus	37.39	39.25
Solyc12g099140.1.1	Tomato	nucleus	34.72	39.0
Bra010021.1-P	Field mustard	nucleus	37.09	38.7
Bra010022.1-P	Field mustard	nucleus	37.09	38.7
CDY33891	Canola	nucleus	36.5	38.68
Bra020624.1-P	Field mustard	nucleus	36.5	38.68
CDY05611	Canola	nucleus	36.5	38.68
KXG39500	Sorghum	nucleus	37.98	38.1
KXG36991	Sorghum	nucleus	38.58	38.01
Bra001202.1-P	Field mustard	nucleus	33.53	37.17
AT3G06490.1	Thale cress	nucleus	35.61	37.15
CDY24688	Canola	nucleus	34.72	36.68
CDX99864	Canola	nucleus	34.72	36.56
CDY34949	Canola	nucleus	34.72	36.56
CDY05270	Canola	nucleus	34.72	36.34
Bra029582.1-P	Field mustard	nucleus	34.72	36.34
Bra040274.1-P	Field mustard	nucleus	34.42	36.25
KXG29192	Sorghum	nucleus	22.85	33.77
KXG23736	Sorghum	nucleus	23.44	32.92
CDY70282	Canola	nucleus	28.19	32.31
KXG21220	Sorghum	nucleus	37.39	31.03
EES00381	Sorghum	nucleus	35.01	30.33
KXG29190	Sorghum	nucleus	18.69	29.72
EES01143	Sorghum	nucleus	25.22	29.01
EER92876	Sorghum	nucleus	21.36	28.46
EES07157	Sorghum	nucleus	24.04	28.12
KXG21221	Sorghum	nucleus	38.28	27.04
KXG26684	Sorghum	nucleus	22.55	26.95
CDX74100	Canola	nucleus	26.11	26.11
OQU77249	Sorghum	nucleus	23.74	25.97
EES17592	Sorghum	nucleus	24.33	24.55
CDY58600	Canola	nucleus	18.1	18.89

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8068849	UniProt:C5YPU9	ncoils:Coil	EnsemblPlants:EES17207
ProteinID:EES17207	ProteinID:EES17207.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF548	InterPro:SANT/Myb
SMART:SM00717	EnsemblPlantsGene:SORBI_3008G131400	SUPFAM:SSF46689	UniParc:UPI0001A87F5F	RefSeq:XP_002443369.1	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:55724538..55727053

Molecular Weight (calculated)

36442.2 Da

IEP (calculated)

6.372

GRAVY (calculated)

-0.520

Length

337 amino acids

Sequence
(BLAST)

001: MAAAQQSRSR SSAAAAKAAA CSPGAGGPVE VGEKLELRRG PWTVDEDLTL VNYIADNGEG RWNNLARAAG LKRTGKSCRL RWLNYLRPDV KRGNFSADEQ
101: LLILDLHTRW GNRWSKIAQH LPGRTDNEIK NYWRTRVQKH AKQLNCDANS KRFKDAMRYL WMPHLVDIAA AAATDDEHHH HLSLLHHHQQ QQQEVAGGAG
201: NNGDLAAAGY AAAADVQLHA LSSSGLTTTG MTTTTTSSSD SFASGSYEDG GGLRQFANVL AGEMLLDCGG GDWAAGQEAN NQGLWPSFDY DQSVPAQAAA
301: AAGGGGQFQD PELSGWVQGF SESITDNFWA LEEILRI

Best Arabidopsis Sequence Match ( AT1G48000.1 )
(BLAST)

001: MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ

Arabidopsis Description

MYB112MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q94CJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.