Factsheet for Bra020624.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33891	Canola	nucleus	100.0	100.0
CDY05611	Canola	nucleus	98.74	98.74
Bra010021.1-P	Field mustard	nucleus	82.7	81.42
Bra010022.1-P	Field mustard	nucleus	82.7	81.42
GSMUA_Achr4P19990_001	Banana	nucleus	31.13	77.34
AT5G49620.2	Thale cress	nucleus	72.33	71.65
Bra001202.1-P	Field mustard	nucleus	67.92	71.05
GSMUA_Achr5P21090_001	Banana	nucleus	39.94	69.78
Bra029582.1-P	Field mustard	nucleus	68.87	68.01
Bra040274.1-P	Field mustard	nucleus	66.98	66.56
PGSC0003DMT400011745	Potato	nucleus	48.11	65.38
PGSC0003DMT400011750	Potato	nucleus	46.86	64.78
Solyc12g099130.1.1	Tomato	nucleus	46.54	62.98
Solyc12g099120.1.1	Tomato	nucleus	48.74	62.75
PGSC0003DMT400022600	Potato	nucleus	54.72	58.59
Solyc01g057910.2.1	Tomato	nucleus	52.83	58.54
GSMUA_Achr3P12730_001	Banana	nucleus	31.76	57.71
VIT_05s0077g00500.t01	Wine grape	nucleus	54.09	56.21
GSMUA_Achr8P10800_001	Banana	nucleus	43.71	54.3
GSMUA_Achr11P...	Banana	nucleus	44.34	53.82
GSMUA_Achr11P...	Banana	nucleus	44.03	53.03
GSMUA_AchrUn_...	Banana	nucleus	44.34	52.81
GSMUA_Achr9P16640_001	Banana	nucleus	42.77	52.31
GSMUA_AchrUn_...	Banana	nucleus	45.91	51.96
KRH50671	Soybean	nucleus	52.83	51.69
PGSC0003DMT400011748	Potato	nucleus	47.8	51.53
Solyc12g099140.1.1	Tomato	nucleus	48.43	51.33
KRH02414	Soybean	nucleus	51.89	51.24
GSMUA_Achr1P24960_001	Banana	nucleus	43.08	50.74
Solyc05g053330.2.1	Tomato	nucleus	49.37	49.37
KRG97314	Soybean	nucleus	52.83	49.27
GSMUA_Achr8P29910_001	Banana	nucleus	41.51	49.07
KRH36928	Soybean	nucleus	52.2	48.82
Bra004473.1-P	Field mustard	nucleus	41.82	48.36
PGSC0003DMT400069841	Potato	nucleus	48.74	47.84
TraesCS4A01G172200.1	Wheat	nucleus	42.45	46.71
Bra021389.1-P	Field mustard	nucleus	39.94	46.69
TraesCS4D01G142900.1	Wheat	nucleus	42.77	46.42
Bra039108.1-P	Field mustard	nucleus	29.87	46.34
TraesCSU01G069000.1	Wheat	nucleus	42.14	46.21
HORVU4Hr1G028780.1	Barley	nucleus	42.45	46.08
GSMUA_AchrUn_...	Banana	nucleus	39.62	45.82
TraesCS4A01G124900.1	Wheat	nucleus	45.91	45.77
TraesCS4D01G181100.1	Wheat	nucleus	45.91	45.77
TraesCS4B01G179500.1	Wheat	nucleus	45.28	45.28
TraesCS3D01G413700.1	Wheat	nucleus	41.51	45.05
TraesCS5B01G093000.1	Wheat	nucleus	39.31	44.96
TraesCS5D01G099100.1	Wheat	nucleus	39.31	44.96
TraesCS5A01G087100.1	Wheat	nucleus	38.99	44.6
HORVU5Hr1G022690.1	Barley	nucleus	39.31	44.33
TraesCS3B01G453300.1	Wheat	nucleus	42.77	44.3
Bra001005.1-P	Field mustard	nucleus	28.62	43.75
Bra039067.1-P	Field mustard	nucleus	31.45	43.1
GSMUA_Achr7P05570_001	Banana	nucleus	36.79	43.01
TraesCS3A01G418100.1	Wheat	nucleus	41.51	42.86
TraesCS3D01G014800.1	Wheat	nucleus	37.11	42.45
Zm00001d028930_P001	Maize	nucleus	44.65	42.26
Bra025300.1-P	Field mustard	nucleus	30.82	42.24
KXG39500	Sorghum	nucleus	44.34	41.96
EES00624	Sorghum	nucleus	39.94	41.5
TraesCS1A01G076200.1	Wheat	nucleus	41.82	41.05
KXG36991	Sorghum	nucleus	44.03	40.94
TraesCS1D01G078600.1	Wheat	nucleus	41.51	40.87
HORVU1Hr1G016420.1	Barley	nucleus	41.51	40.62
TraesCS1B01G094500.1	Wheat	nucleus	41.51	40.49
GSMUA_Achr11P...	Banana	nucleus	43.71	40.41
HORVU3Hr1G092820.1	Barley	nucleus	41.82	40.18
Zm00001d007191_P001	Maize	nucleus	43.71	40.06
Zm00001d040594_P001	Maize	nucleus	38.05	39.93
Zm00001d047579_P001	Maize	nucleus	43.4	39.54
Bra004297.1-P	Field mustard	nucleus	34.91	39.08
HORVU4Hr1G052490.5	Barley	nucleus, plastid	45.28	39.02
Zm00001d009066_P001	Maize	nucleus	38.36	38.36
GSMUA_Achr3P08370_001	Banana	nucleus	34.59	38.33
Bra004041.1-P	Field mustard	nucleus	33.96	38.3
Bra012482.1-P	Field mustard	nucleus	33.65	37.68
Bra033948.1-P	Field mustard	nucleus	33.65	37.54
TraesCS2A01G097200.1	Wheat	nucleus	38.05	37.12
TraesCS2D01G096000.1	Wheat	nucleus	37.74	36.59
EES17207	Sorghum	nucleus	38.68	36.5
TraesCS2B01G112600.1	Wheat	nucleus	38.05	36.45
Zm00001d030644_P001	Maize	nucleus	39.94	36.18
Bra024760.1-P	Field mustard	nucleus	30.19	36.09
EES10257	Sorghum	nucleus	40.88	35.62
Zm00001d010933_P001	Maize	nucleus	40.88	35.42
Zm00001d048647_P001	Maize	nucleus	38.99	35.23
Zm00001d024726_P001	Maize	nucleus	38.36	34.37
Bra015029.1-P	Field mustard	nucleus	28.62	33.58
Os05t0132700-01	Rice	nucleus	22.64	33.49
Bra020289.1-P	Field mustard	nucleus	24.84	33.47
Bra002533.1-P	Field mustard	nucleus	24.53	32.91
Bra001941.1-P	Field mustard	nucleus	28.3	32.85
HORVU2Hr1G016380.1	Barley	nucleus	37.11	32.51
Bra006694.1-P	Field mustard	nucleus	24.53	32.23
Bra028369.1-P	Field mustard	nucleus	27.67	32.12
Zm00001d024725_P001	Maize	nucleus	40.88	32.02
KXG21220	Sorghum	nucleus	40.57	31.77
Bra018223.1-P	Field mustard	nucleus	24.53	30.95
Bra028550.1-P	Field mustard	nucleus	23.27	30.83
Bra020744.1-P	Field mustard	nucleus	24.84	30.74
Bra006977.1-P	Field mustard	nucleus	23.58	30.61
Bra025410.1-P	Field mustard	nucleus	25.47	30.22
Bra036202.1-P	Field mustard	nucleus	24.53	29.21
KXG21221	Sorghum	nucleus	39.62	26.42

Protein Annotations

EnsemblPlants:Bra020624.1	EnsemblPlants:Bra020624.1-P	EnsemblPlantsGene:Bra020624	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF743	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002546704	UniProt:M4DVT0	MapMan:15.5.2.1	:	:

Description

AT5G49620 (E=4e-107) AtMYB78 | AtMYB78 (myb domain protein 78); DNA binding / transcription factor

Coordinates

chrA02:-:24132565..24134440

Molecular Weight (calculated)

36695.7 Da

IEP (calculated)

5.215

GRAVY (calculated)

-0.794

Length

318 amino acids

Sequence
(BLAST)

001: MDDKRSLMMN KNIGDFENNV DEEMDLRRGP WTVEEDFKLI NYISTHGEGR WNSLSRCAGL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLRCDVNSQ QFKDTMRYLW MPRLVERIQA SASTSTGSAT TSSCVTTPSD QFLMTSYDAG LNNNNNTNMD
201: HLNFMSNPNG YVTQETSSVS VSPTSGLTEY HIGSEVEKVE NNQDQSLVGP QIMSPPQNYL DVNGGLLSED LTQSYHNWFE NDNGMISPYS DSFWNIGSDE
301: DFWLLLQQQQ QLVNNGSF

Best Arabidopsis Sequence Match ( AT5G49620.1 )
(BLAST)

001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF

Arabidopsis Description

AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.