Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G453300.1 | Wheat | nucleus | 93.17 | 88.93 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 91.13 | 86.69 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 91.13 | 80.66 |
| Os01t0298400-01 | Rice | extracellular, nucleus | 66.55 | 66.55 |
| CDX85422 | Canola | nucleus | 39.25 | 62.84 |
| CDX86220 | Canola | nucleus | 39.25 | 59.59 |
| Zm00001d040594_P001 | Maize | nucleus | 57.0 | 55.12 |
| EES00624 | Sorghum | nucleus | 57.34 | 54.9 |
| Zm00001d009066_P001 | Maize | nucleus | 58.02 | 53.46 |
| PGSC0003DMT400011750 | Potato | nucleus | 38.91 | 49.57 |
| PGSC0003DMT400011745 | Potato | nucleus | 38.91 | 48.72 |
| Solyc12g099130.1.1 | Tomato | nucleus | 38.57 | 48.09 |
| Solyc12g099120.1.1 | Tomato | nucleus | 38.91 | 46.15 |
| AT1G48000.1 | Thale cress | nucleus | 37.88 | 45.68 |
| Solyc01g057910.2.1 | Tomato | nucleus | 44.71 | 45.64 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 47.44 | 45.42 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 44.71 | 44.71 |
| PGSC0003DMT400022600 | Potato | nucleus | 44.71 | 44.11 |
| TraesCS4D01G181100.1 | Wheat | nucleus | 47.1 | 43.26 |
| Bra001202.1-P | Field mustard | nucleus | 43.34 | 41.78 |
| CDY05611 | Canola | nucleus | 45.05 | 41.51 |
| CDY33891 | Canola | nucleus | 45.05 | 41.51 |
| Bra020624.1-P | Field mustard | nucleus | 45.05 | 41.51 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 45.73 | 41.49 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 39.25 | 41.37 |
| TraesCS5D01G099100.1 | Wheat | nucleus | 38.91 | 41.01 |
| CDY24688 | Canola | nucleus | 44.37 | 40.75 |
| KRH02414 | Soybean | nucleus | 44.71 | 40.68 |
| KRH50671 | Soybean | nucleus | 45.05 | 40.62 |
| CDY05270 | Canola | nucleus | 44.03 | 40.06 |
| AT3G06490.1 | Thale cress | nucleus | 44.03 | 39.94 |
| Solyc05g053330.2.1 | Tomato | nucleus | 43.34 | 39.94 |
| AT5G49620.2 | Thale cress | nucleus | 43.69 | 39.88 |
| Bra029582.1-P | Field mustard | nucleus | 43.69 | 39.75 |
| CDX99864 | Canola | nucleus | 43.34 | 39.69 |
| Bra040274.1-P | Field mustard | nucleus | 43.34 | 39.69 |
| CDY34949 | Canola | nucleus | 43.34 | 39.69 |
| PGSC0003DMT400011748 | Potato | nucleus | 39.93 | 39.66 |
| Bra010021.1-P | Field mustard | nucleus | 43.69 | 39.63 |
| Bra010022.1-P | Field mustard | nucleus | 43.69 | 39.63 |
| PGSC0003DMT400069841 | Potato | nucleus | 43.0 | 38.89 |
| KRG97314 | Soybean | nucleus | 45.05 | 38.71 |
| Solyc12g099140.1.1 | Tomato | nucleus | 39.59 | 38.67 |
| KRH36928 | Soybean | nucleus | 44.71 | 38.53 |
| TraesCS1D01G415000.1 | Wheat | nucleus | 29.69 | 38.16 |
| TraesCS3D01G223700.1 | Wheat | nucleus | 26.96 | 36.92 |
| TraesCS2D01G096000.1 | Wheat | nucleus | 40.27 | 35.98 |
| CDY70282 | Canola | nucleus | 35.84 | 35.71 |
| GSMUA_Achr11P... | Banana | nucleus | 41.64 | 35.47 |
| TraesCS2D01G361600.1 | Wheat | nucleus | 29.69 | 33.85 |
| TraesCS5D01G095600.1 | Wheat | nucleus | 26.28 | 32.49 |
| TraesCS3D01G540600.1 | Wheat | nucleus | 27.65 | 31.64 |
| TraesCS4D01G142300.1 | Wheat | nucleus | 25.6 | 31.51 |
| TraesCS3D01G036200.1 | Wheat | nucleus | 36.18 | 30.81 |
| TraesCS1D01G043300.1 | Wheat | nucleus | 26.28 | 30.32 |
| CDX74100 | Canola | nucleus | 34.47 | 29.97 |
| TraesCS4D01G339100.1 | Wheat | nucleus | 25.26 | 29.96 |
| TraesCS6D01G207300.1 | Wheat | nucleus | 27.65 | 29.45 |
| CDY58600 | Canola | nucleus | 22.18 | 20.12 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G413700.1 | EnsemblPlantsGene:TraesCS3D01G413700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF659 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:525917011..525917892
Molecular Weight (calculated)
32950.5 Da
IEP (calculated)
6.045
GRAVY (calculated)
-0.573
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHFDSFGST GMDAVWMGSC GWPAASATSG EQEAVDLRRG PWTMEEDALL AGHIAKHGEG RWNELACAAG LRRTGKSCRL RWLNYLRPDV RRGDFTPQEQ
101: LLILELHFRW GNRWSRIARE MPGRTDNEIK NYWRTRVQKH AKQLKCDVDS RQFRDVMRHL WMPRLVERIQ AAATAATPAP ILEHAPSPMY HSPETTTVTT
201: SSTAGSSVSL EVQFPSNQLV MTVGSATNWS GAGSEQCGSA SARSDDMFDG SWSELLARAC DDGADSVVFP NFELGESRDD KWSLEDIWLQ HQY
101: LLILELHFRW GNRWSRIARE MPGRTDNEIK NYWRTRVQKH AKQLKCDVDS RQFRDVMRHL WMPRLVERIQ AAATAATPAP ILEHAPSPMY HSPETTTVTT
201: SSTAGSSVSL EVQFPSNQLV MTVGSATNWS GAGSEQCGSA SARSDDMFDG SWSELLARAC DDGADSVVFP NFELGESRDD KWSLEDIWLQ HQY
001: MSNITKKKCN GNEEGAEQRK GPWTLEEDTL LTNYISHNGE GRWNLLAKSS GLKRAGKSCR LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKISK
101: YLPGRTDNDI KNYWRTRVQK QARQLNIDSN SHKFIEVVRS FWFPRLINEI KDNSYTNNIK ANAPDLLGPI LRDSKDLGFN NMDCSTSMSE DLKKTSQFMD
201: FSDLETTMSL EGSRGGSSQC VSEVYSSFPC LEEEYMVAVM GSSDISALHD CHVADSKYED DVTQDLMWNM DDIWQFNEYA HFN
101: YLPGRTDNDI KNYWRTRVQK QARQLNIDSN SHKFIEVVRS FWFPRLINEI KDNSYTNNIK ANAPDLLGPI LRDSKDLGFN NMDCSTSMSE DLKKTSQFMD
201: FSDLETTMSL EGSRGGSSQC VSEVYSSFPC LEEEYMVAVM GSSDISALHD CHVADSKYED DVTQDLMWNM DDIWQFNEYA HFN
Arabidopsis Description
MYB116myb domain protein 116 [Source:TAIR;Acc:AT1G25340]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.