Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G055200.1 | Wheat | nucleus | 95.67 | 90.67 |
| TraesCS1A01G042700.1 | Wheat | nucleus | 90.94 | 87.83 |
| HORVU1Hr1G008810.3 | Barley | nucleus | 86.22 | 84.88 |
| GSMUA_Achr6P15370_001 | Banana | nucleus | 47.24 | 57.42 |
| GSMUA_Achr10P... | Banana | nucleus | 48.43 | 52.12 |
| PGSC0003DMT400040149 | Potato | nucleus | 42.91 | 50.0 |
| Solyc11g073120.1.1 | Tomato | nucleus | 42.13 | 49.31 |
| TraesCS3D01G540600.1 | Wheat | nucleus | 49.61 | 49.22 |
| TraesCS5D01G095600.1 | Wheat | nucleus | 45.67 | 48.95 |
| Solyc06g005330.2.1 | Tomato | nucleus | 44.88 | 48.31 |
| GSMUA_Achr7P18200_001 | Banana | nucleus | 45.67 | 48.13 |
| OQU77249 | Sorghum | nucleus | 58.27 | 48.05 |
| GSMUA_Achr5P28350_001 | Banana | nucleus | 44.09 | 47.26 |
| AT5G59780.3 | Thale cress | nucleus | 43.7 | 47.23 |
| GSMUA_Achr11P... | Banana | nucleus | 44.49 | 46.89 |
| VIT_06s0004g04140.t01 | Wine grape | nucleus | 47.24 | 46.88 |
| Zm00001d035605_P001 | Maize | nucleus | 59.84 | 46.48 |
| CDY70097 | Canola | nucleus | 42.52 | 45.76 |
| Bra020289.1-P | Field mustard | nucleus | 42.52 | 45.76 |
| TraesCS4D01G142300.1 | Wheat | nucleus | 42.52 | 45.38 |
| CDX71075 | Canola | nucleus | 42.91 | 45.23 |
| EES17592 | Sorghum | nucleus | 59.45 | 45.21 |
| CDY49581 | Canola | nucleus | 41.73 | 44.73 |
| Bra002533.1-P | Field mustard | nucleus | 41.73 | 44.73 |
| KRH10298 | Soybean | nucleus | 44.88 | 44.71 |
| CDX80230 | Canola | nucleus | 41.34 | 44.3 |
| Bra018223.1-P | Field mustard | nucleus | 43.7 | 44.05 |
| KRH23019 | Soybean | nucleus | 45.67 | 43.94 |
| Bra006694.1-P | Field mustard | nucleus | 41.73 | 43.8 |
| AT3G46130.1 | Thale cress | nucleus | 44.49 | 43.8 |
| CDX88722 | Canola | nucleus | 41.34 | 43.39 |
| KRH29850 | Soybean | nucleus | 42.91 | 40.98 |
| KRH24842 | Soybean | nucleus | 42.13 | 40.23 |
| CDX86041 | Canola | nucleus | 43.7 | 39.93 |
| CDX99125 | Canola | nucleus | 43.7 | 39.93 |
| CDX86040 | Canola | nucleus | 43.7 | 39.93 |
| Zm00001d035604_P001 | Maize | nucleus | 57.09 | 39.4 |
| TraesCS4D01G339100.1 | Wheat | nucleus | 32.28 | 33.2 |
| TraesCS3D01G223700.1 | Wheat | nucleus | 27.95 | 33.18 |
| TraesCS1D01G415000.1 | Wheat | nucleus | 29.53 | 32.89 |
| TraesCS5D01G099100.1 | Wheat | nucleus | 30.71 | 28.06 |
| TraesCS2D01G361600.1 | Wheat | nucleus | 27.95 | 27.63 |
| TraesCS6D01G207300.1 | Wheat | nucleus | 29.13 | 26.91 |
| TraesCS3D01G413700.1 | Wheat | nucleus | 30.32 | 26.28 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 30.32 | 26.28 |
| TraesCS4D01G181100.1 | Wheat | nucleus | 32.28 | 25.71 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 31.5 | 24.77 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 26.77 | 24.46 |
| TraesCS3D01G036200.1 | Wheat | nucleus | 30.71 | 22.67 |
| TraesCS2D01G096000.1 | Wheat | nucleus | 28.74 | 22.26 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G043300.1 | EnsemblPlantsGene:TraesCS1D01G043300 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF591 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:22436323..22437644
Molecular Weight (calculated)
28708.4 Da
IEP (calculated)
6.057
GRAVY (calculated)
-0.736
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARKGPWTE NEDAQLVWFV RLLGERRWDF LAQVSGLRRT GKSCRLRWVN YLHPGLKRGR ITADEERLIL SLHAEWGSRW SRIARKLPGR TDNEIKNYWR
101: THMRKKAQEE KMLAKKKASS SPSSSSSSTT SLTCSASPTA TSSSAATTEA PQESTTTSMD DEAEQEATTS ASEEKKAEVV QYCSAVDMDQ LWNDIAASES
201: YPEMMMSWGA AGHVAMPAPA VEPSSPVWEF CEDYSLWRID DQEYYNKIDQ HALN
101: THMRKKAQEE KMLAKKKASS SPSSSSSSTT SLTCSASPTA TSSSAATTEA PQESTTTSMD DEAEQEATTS ASEEKKAEVV QYCSAVDMDQ LWNDIAASES
201: YPEMMMSWGA AGHVAMPAPA VEPSSPVWEF CEDYSLWRID DQEYYNKIDQ HALN
001: MDFKKEETLR RGPWLEEEDE RLVKVISLLG ERRWDSLAIV SGLKRSGKSC RLRWMNYLNP TLKRGPMSQE EERIIFQLHA LWGNKWSKIA RRLPGRTDNE
101: IKNYWRTHYR KKQEAQNYGK LFEWRGNTGE ELLHKYKETE ITRTKTTSQE HGFVEVVSME SGKEANGGVG GRESFGVMKS PYENRISDWI SEISTDQSEA
201: NLSEDHSSNS CSENNINIGT WWFQETRDFE EFSCSLWS
101: IKNYWRTHYR KKQEAQNYGK LFEWRGNTGE ELLHKYKETE ITRTKTTSQE HGFVEVVSME SGKEANGGVG GRESFGVMKS PYENRISDWI SEISTDQSEA
201: NLSEDHSSNS CSENNINIGT WWFQETRDFE EFSCSLWS
Arabidopsis Description
MYB27Transcription factor MYB27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.