Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G043300.1 | Wheat | nucleus | 90.67 | 95.67 |
| TraesCS1A01G042700.1 | Wheat | nucleus | 89.55 | 91.25 |
| HORVU1Hr1G008810.3 | Barley | nucleus | 84.7 | 87.98 |
| GSMUA_Achr6P15370_001 | Banana | nucleus | 44.78 | 57.42 |
| GSMUA_Achr10P... | Banana | nucleus | 45.52 | 51.69 |
| PGSC0003DMT400040149 | Potato | nucleus | 41.04 | 50.46 |
| TraesCS5B01G089200.1 | Wheat | nucleus | 44.4 | 50.21 |
| Solyc11g073120.1.1 | Tomato | nucleus | 40.3 | 49.77 |
| TraesCS3B01G612200.2 | Wheat | nucleus | 48.88 | 49.62 |
| Zm00001d035605_P001 | Maize | nucleus | 58.96 | 48.32 |
| Solyc06g005330.2.1 | Tomato | nucleus | 42.54 | 48.31 |
| OQU77249 | Sorghum | nucleus | 55.22 | 48.05 |
| GSMUA_Achr7P18200_001 | Banana | nucleus | 42.91 | 47.72 |
| GSMUA_Achr5P28350_001 | Banana | nucleus | 42.16 | 47.68 |
| AT5G59780.3 | Thale cress | nucleus | 41.79 | 47.66 |
| VIT_06s0004g04140.t01 | Wine grape | nucleus | 45.52 | 47.66 |
| GSMUA_Achr11P... | Banana | nucleus | 42.54 | 47.3 |
| EES17592 | Sorghum | nucleus | 58.21 | 46.71 |
| TraesCS4B01G143700.1 | Wheat | nucleus | 41.04 | 46.22 |
| CDY70097 | Canola | nucleus | 40.67 | 46.19 |
| Bra020289.1-P | Field mustard | nucleus | 40.67 | 46.19 |
| KRH10298 | Soybean | nucleus | 43.28 | 45.49 |
| CDX71075 | Canola | nucleus | 40.67 | 45.23 |
| CDY49581 | Canola | nucleus | 39.93 | 45.15 |
| Bra002533.1-P | Field mustard | nucleus | 39.93 | 45.15 |
| CDX80230 | Canola | nucleus | 39.55 | 44.73 |
| KRH23019 | Soybean | nucleus | 44.03 | 44.7 |
| Bra018223.1-P | Field mustard | nucleus | 41.79 | 44.44 |
| Bra006694.1-P | Field mustard | nucleus | 39.93 | 44.21 |
| AT3G46130.1 | Thale cress | nucleus | 42.54 | 44.19 |
| CDX88722 | Canola | nucleus | 39.55 | 43.8 |
| KRH29850 | Soybean | nucleus | 40.67 | 40.98 |
| CDX99125 | Canola | nucleus | 41.79 | 40.29 |
| CDX86041 | Canola | nucleus | 41.79 | 40.29 |
| CDX86040 | Canola | nucleus | 41.79 | 40.29 |
| KRH24842 | Soybean | nucleus | 39.93 | 40.23 |
| Zm00001d035604_P001 | Maize | nucleus | 54.85 | 39.95 |
| TraesCS3B01G258800.1 | Wheat | nucleus | 27.24 | 34.27 |
| TraesCS4B01G344000.1 | Wheat | nucleus | 30.6 | 33.33 |
| TraesCS5B01G093000.1 | Wheat | nucleus | 30.22 | 29.14 |
| TraesCS6B01G254200.1 | Wheat | nucleus | 29.1 | 28.47 |
| TraesCS2B01G381800.1 | Wheat | nucleus | 26.49 | 27.52 |
| TraesCS1B01G436800.1 | Wheat | nucleus | 19.03 | 26.98 |
| TraesCS3B01G453300.1 | Wheat | nucleus | 29.85 | 26.06 |
| TraesCS4B01G179500.1 | Wheat | nucleus | 30.22 | 25.47 |
| TraesCS1B01G094500.1 | Wheat | nucleus | 30.22 | 24.85 |
| TraesCS3B01G039100.1 | Wheat | nucleus | 30.22 | 23.08 |
| TraesCS2B01G112600.1 | Wheat | nucleus | 27.24 | 21.99 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G055200.1 | EnsemblPlantsGene:TraesCS1B01G055200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF591 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:37799205..37800123
Molecular Weight (calculated)
30151.0 Da
IEP (calculated)
5.463
GRAVY (calculated)
-0.743
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MCNNSGGRGG AMAARKGPWT ENEDAQLVWF VRLLGERRWD FLAQVSGLRR TGKSCRLRWV NYLHPGLKRG RITADEERLI LSLHAEWGSR WSRIARKLPG
101: RTDNEIKNYW RTHMRKKAQE EKMLAKNKAS SSPSSSSADS TSLTTTTCSA SPTATSSSAA TTEEAPQEST TSMDDEAEEE AATSASEEKK AEVVQYCSPV
201: DMDQLWNDIA ASERYPEMMM SWGVAGHVVM PAPAVEPSSP VWEFCEDYSL WRIDDQEYYN KIDQHALN
101: RTDNEIKNYW RTHMRKKAQE EKMLAKNKAS SSPSSSSADS TSLTTTTCSA SPTATSSSAA TTEEAPQEST TSMDDEAEEE AATSASEEKK AEVVQYCSPV
201: DMDQLWNDIA ASERYPEMMM SWGVAGHVVM PAPAVEPSSP VWEFCEDYSL WRIDDQEYYN KIDQHALN
001: MKMMQEEGNR KGPWTEQEDI LLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP GLKRGKMTPQ EERLVLELHA KWGNRWSKIA RKLPGRTDNE
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG
Arabidopsis Description
ATMYB48myb domain protein 48 [Source:TAIR;Acc:AT3G46130]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.