Factsheet for VIT_06s0004g04140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P16200_001	Banana	nucleus	53.12	66.34
PGSC0003DMT400040149	Potato	nucleus	54.3	63.76
Solyc11g073120.1.1	Tomato	nucleus	53.52	63.13
AT5G59780.3	Thale cress	nucleus	56.64	61.7
GSMUA_Achr10P...	Banana	nucleus	54.3	61.5
KRH10298	Soybean	nucleus	60.16	60.39
CDY49581	Canola	nucleus	55.86	60.34
GSMUA_Achr6P15370_001	Banana	nucleus	49.22	60.29
Bra002533.1-P	Field mustard	nucleus	55.47	59.92
CDX80230	Canola	nucleus	55.47	59.92
CDX71075	Canola	nucleus	56.25	59.75
Bra020289.1-P	Field mustard	nucleus	55.08	59.75
CDY70097	Canola	nucleus	55.08	59.75
Bra006694.1-P	Field mustard	nucleus	56.25	59.5
VIT_08s0007g04830.t01	Wine grape	nucleus	28.52	59.35
Solyc06g005330.2.1	Tomato	nucleus	54.3	58.9
CDX88722	Canola	nucleus	55.47	58.68
GSMUA_Achr9P28370_001	Banana	nucleus	48.83	58.41
KRH23019	Soybean	nucleus	60.16	58.33
Bra018223.1-P	Field mustard	nucleus	57.42	58.33
GSMUA_Achr10P...	Banana	nucleus	53.12	57.63
HORVU5Hr1G021750.2	Barley	nucleus	52.73	56.96
GSMUA_Achr10P...	Banana	nucleus	46.48	56.13
KRH24842	Soybean	nucleus	58.2	56.02
KRH29850	Soybean	nucleus	58.2	56.02
TraesCS5B01G089200.1	Wheat	nucleus	51.56	55.7
TraesCS5D01G095600.1	Wheat	nucleus	51.56	55.7
Os12t0567300-00	Rice	nucleus	52.34	55.37
TraesCS5A01G083100.1	Wheat	nucleus	51.17	55.27
KXG29192	Sorghum	nucleus	49.22	55.26
AT3G46130.1	Thale cress	nucleus	55.47	55.04
KXG23736	Sorghum	nucleus	51.56	55.0
Zm00001d048623_P002	Maize	nucleus	48.83	54.82
TraesCS4D01G142300.1	Wheat	nucleus	50.0	53.78
TraesCS4B01G143700.1	Wheat	nucleus	50.0	53.78
Zm00001d030678_P001	Maize	nucleus	50.78	53.72
Os11t0700500-01	Rice	nucleus	49.61	53.59
TraesCS4A01G173300.2	Wheat	nucleus	49.61	53.36
CDX86041	Canola	nucleus	57.42	52.88
CDX99125	Canola	nucleus	57.42	52.88
GSMUA_Achr8P34340_001	Banana	nucleus	50.39	52.65
CDX86040	Canola	nucleus	57.03	52.52
Zm00001d041576_P001	Maize	nucleus	51.17	52.4
GSMUA_Achr5P28350_001	Banana	nucleus	48.05	51.9
GSMUA_Achr11P...	Banana	nucleus	48.83	51.87
GSMUA_Achr8P02640_001	Banana	nucleus	46.09	50.0
GSMUA_Achr7P18200_001	Banana	nucleus	46.88	49.79
TraesCS1D01G043300.1	Wheat	nucleus	46.88	47.24
TraesCS1B01G055200.1	Wheat	nucleus	47.66	45.52
HORVU1Hr1G008810.3	Barley	nucleus	45.7	45.35
TraesCS1A01G042700.1	Wheat	nucleus	45.7	44.49
TraesCS3D01G540600.1	Wheat	nucleus	41.41	41.41
TraesCS3A01G535100.1	Wheat	nucleus	41.41	40.77
TraesCS3B01G612200.2	Wheat	nucleus	41.8	40.53
VIT_14s0066g01090.t01	Wine grape	nucleus	27.34	37.04
OQU77249	Sorghum	nucleus	42.58	35.39
KXG29190	Sorghum	nucleus	29.3	35.38
Os01t0975300-01	Rice	vacuole	28.12	34.29
Zm00001d035605_P001	Maize	nucleus	43.36	33.95
VIT_05s0049g02260.t01	Wine grape	nucleus	33.2	33.2
EES17592	Sorghum	nucleus	42.19	32.34
VIT_14s0083g01060.t01	Wine grape	nucleus	30.86	31.98
Zm00001d035604_P001	Maize	nucleus	43.75	30.43
VIT_07s0005g01950.t01	Wine grape	nucleus	29.3	27.57
VIT_05s0077g00500.t01	Wine grape	nucleus	32.42	27.12
VIT_01s0011g03730.t01	Wine grape	nucleus	30.08	26.74
VIT_17s0000g03560.t01	Wine grape	nucleus	33.2	25.91

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100260318	wikigene:100260318	MapMan:15.5.2.1	ProteinID:CCB43604	ProteinID:CCB43604.1
UniProt:F6GV45	EMBL:FN594951	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100260318	wikigene:LOC100260318	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF484	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGR:TC65745	UniParc:UPI0002109CE0
ArrayExpress:VIT_06s0004g04140	EnsemblPlantsGene:VIT_06s0004g04140	EnsemblPlants:VIT_06s0004g04140.t01	unigene:Vvi.16897	RefSeq:XP_002284400	RefSeq:XP_002284400.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:5102967..5104211

Molecular Weight (calculated)

29586.8 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.908

Length

256 amino acids

Sequence
(BLAST)

001: MVQEEIRKGP WTEKEDFQLV CFVGLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK RGKMTPHEER LVLELHSQWG NRWSRIARKL PGRTDNEIKN
101: YWRTHMRKKA QERKRAISPS SPSSNCSSSA PHNPKVDLLP FSETEERSFH DTGGPKALAP TGKKTEEEKE ADKGYSMDDI WKDIAFSEEN TIKPVYDGYK
201: EEGCDFACPP NPMASPVWDY CPDSLWRMDE EESKMFLPMS DQFISSYEHG MASLTG

Best Arabidopsis Sequence Match ( AT5G59780.3 )
(BLAST)

001: MKLVQEEYRK GPWTEQEDIL LVNFVHLFGD RRWDFVAKVS GLNRTGKSCR LRWVNYLHPG LKRGKMTPQE ERLVLELHAK WGNRWSKIAR KLPGRTDNEI
101: KNYWRTHMRK KAQEKKRPMS PTSSSSNCCS SSMTTTTSQD TGGSNGKMNQ ECEDGYYSMD DIWREIDQSG ANVIKPVKDN YYSEQSCYLN FPPLASPTWE
201: SSLESIWNMD ADESKMSSFA IDQFPLSFEH GSGRL

Arabidopsis Description

MYB59Transcription factor MYB59 [Source:UniProtKB/Swiss-Prot;Acc:Q4JL84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.