Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG23736 | Sorghum | nucleus | 95.04 | 95.83 |
| Zm00001d041576_P001 | Maize | nucleus | 90.91 | 88.0 |
| TraesCS5B01G089200.1 | Wheat | nucleus | 79.75 | 81.43 |
| TraesCS5D01G095600.1 | Wheat | nucleus | 79.34 | 81.01 |
| Os12t0567300-00 | Rice | nucleus | 80.99 | 80.99 |
| TraesCS5A01G083100.1 | Wheat | nucleus | 78.51 | 80.17 |
| HORVU5Hr1G021750.2 | Barley | nucleus | 78.1 | 79.75 |
| Zm00001d048623_P002 | Maize | nucleus | 67.77 | 71.93 |
| AT5G59780.3 | Thale cress | nucleus | 53.31 | 54.89 |
| CDX71075 | Canola | nucleus | 52.89 | 53.11 |
| CDY70097 | Canola | nucleus | 51.65 | 52.97 |
| Bra020289.1-P | Field mustard | nucleus | 51.65 | 52.97 |
| PGSC0003DMT400040149 | Potato | nucleus | 47.52 | 52.75 |
| Solyc11g073120.1.1 | Tomato | nucleus | 47.11 | 52.53 |
| Bra006694.1-P | Field mustard | nucleus | 52.48 | 52.48 |
| Bra002533.1-P | Field mustard | nucleus | 50.83 | 51.9 |
| CDY49581 | Canola | nucleus | 50.83 | 51.9 |
| CDX88722 | Canola | nucleus | 51.65 | 51.65 |
| CDX80230 | Canola | nucleus | 50.41 | 51.48 |
| VIT_06s0004g04140.t01 | Wine grape | nucleus | 53.72 | 50.78 |
| Bra018223.1-P | Field mustard | nucleus | 52.48 | 50.4 |
| Solyc06g005330.2.1 | Tomato | nucleus | 48.35 | 49.58 |
| AT3G46130.1 | Thale cress | nucleus | 51.65 | 48.45 |
| KRH10298 | Soybean | nucleus | 49.59 | 47.06 |
| KRH23019 | Soybean | nucleus | 50.0 | 45.83 |
| CDX99125 | Canola | nucleus | 52.48 | 45.68 |
| CDX86040 | Canola | nucleus | 52.48 | 45.68 |
| CDX86041 | Canola | nucleus | 52.48 | 45.68 |
| KRH29850 | Soybean | nucleus | 48.76 | 44.36 |
| KRH24842 | Soybean | nucleus | 47.11 | 42.86 |
| Zm00001d048383_P001 | Maize | nucleus | 32.23 | 33.62 |
| Zm00001d035605_P001 | Maize | nucleus | 44.21 | 32.72 |
| Zm00001d027623_P001 | Maize | nucleus | 33.06 | 32.13 |
| Zm00001d035604_P001 | Maize | nucleus | 47.11 | 30.98 |
| Zm00001d044107_P001 | Maize | nucleus | 32.64 | 29.92 |
| Zm00001d017243_P001 | Maize | nucleus | 34.3 | 29.54 |
| Zm00001d025823_P001 | Maize | nucleus | 31.82 | 27.7 |
| Zm00001d007191_P001 | Maize | nucleus | 35.95 | 25.07 |
| Zm00001d040594_P001 | Maize | nucleus | 30.99 | 24.75 |
| Zm00001d030644_P001 | Maize | nucleus | 35.12 | 24.22 |
| Zm00001d028930_P001 | Maize | nucleus | 33.47 | 24.11 |
| Zm00001d051117_P001 | Maize | nucleus | 27.27 | 23.66 |
| Zm00001d009066_P001 | Maize | nucleus | 30.99 | 23.58 |
| Zm00001d047579_P001 | Maize | nucleus | 33.47 | 23.21 |
| Zm00001d040019_P001 | Maize | nucleus | 33.47 | 22.38 |
| Zm00001d048647_P001 | Maize | nucleus | 31.82 | 21.88 |
| Zm00001d008528_P001 | Maize | nucleus | 32.64 | 21.82 |
| Zm00001d010933_P001 | Maize | nucleus | 31.82 | 20.98 |
| Zm00001d024726_P001 | Maize | nucleus | 30.58 | 20.85 |
| Zm00001d024725_P001 | Maize | nucleus | 31.41 | 18.72 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100194394 | MapMan:15.5.2.1 | EMBL:BT087286 | UniProt:C4J8Y9 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | EMBL:KJ727737 |
| InterPro:Myb_dom | ProteinID:ONM01374.1 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF698 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001A4C430 | EnsemblPlantsGene:Zm00001d030678 | EnsemblPlants:Zm00001d030678_P001 |
| EnsemblPlants:Zm00001d030678_T001 | SEG:seg | : | : | : | : |
Description
MYB-transcription factor 56Transcription factor MYB48
Coordinates
chr1:-:152667851..152669369
Molecular Weight (calculated)
27771.0 Da
IEP (calculated)
8.363
GRAVY (calculated)
-0.745
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG LKRGRMSPHE ERLILELHAR WGNRWSRIAR RLPGRTDNEI
101: KNYWRTHMRK KAQERKRNMS PSSSSSSLTY QSGYPDTPST IGVEGQELHG GSGCITSILK GTPPDMDGYP MDQIWMEIEA PQMPSEESFV GGNHNVCSSL
201: ATPLPPPTVW EYYPDACWKV DDEIKMATQF QFGYSEGVGP CF
101: KNYWRTHMRK KAQERKRNMS PSSSSSSLTY QSGYPDTPST IGVEGQELHG GSGCITSILK GTPPDMDGYP MDQIWMEIEA PQMPSEESFV GGNHNVCSSL
201: ATPLPPPTVW EYYPDACWKV DDEIKMATQF QFGYSEGVGP CF
001: MKLVQEEYRK GPWTEQEDIL LVNFVHLFGD RRWDFVAKVS GLNRTGKSCR LRWVNYLHPG LKRGKMTPQE ERLVLELHAK WGNRWSKIAR KLPGRTDNEI
101: KNYWRTHMRK KAQEKKRPMS PTSSSSNCCS SSMTTTTSQD TGGSNGKMNQ ECEDGYYSMD DIWREIDQSG ANVIKPVKDN YYSEQSCYLN FPPLASPTWE
201: SSLESIWNMD ADESKMSSFA IDQFPLSFEH GSGRL
101: KNYWRTHMRK KAQEKKRPMS PTSSSSNCCS SSMTTTTSQD TGGSNGKMNQ ECEDGYYSMD DIWREIDQSG ANVIKPVKDN YYSEQSCYLN FPPLASPTWE
201: SSLESIWNMD ADESKMSSFA IDQFPLSFEH GSGRL
Arabidopsis Description
MYB59Transcription factor MYB59 [Source:UniProtKB/Swiss-Prot;Acc:Q4JL84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.