Factsheet for Solyc11g073120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040149	Potato	nucleus	97.23	96.79
Solyc06g005330.2.1	Tomato	nucleus	69.12	63.56
GSMUA_Achr2P16200_001	Banana	nucleus	53.46	56.59
GSMUA_Achr9P28370_001	Banana	nucleus	53.0	53.74
VIT_06s0004g04140.t01	Wine grape	nucleus	63.13	53.52
GSMUA_Achr6P15370_001	Banana	nucleus	51.15	53.11
GSMUA_Achr10P...	Banana	nucleus	54.84	52.65
AT5G59780.3	Thale cress	nucleus	55.76	51.49
HORVU5Hr1G021750.2	Barley	nucleus	55.3	50.63
TraesCS5D01G095600.1	Wheat	nucleus	55.3	50.63
KRH10298	Soybean	nucleus	59.45	50.59
GSMUA_Achr10P...	Banana	nucleus	49.31	50.47
Solyc09g008390.1.1	Tomato	nucleus	30.41	50.38
TraesCS5A01G083100.1	Wheat	nucleus	54.84	50.21
TraesCS5B01G089200.1	Wheat	nucleus	54.84	50.21
Bra018223.1-P	Field mustard	nucleus	57.6	49.6
CDY70097	Canola	nucleus	53.92	49.58
Bra020289.1-P	Field mustard	nucleus	53.92	49.58
KXG29192	Sorghum	nucleus	52.07	49.56
CDY49581	Canola	nucleus	53.92	49.37
Bra002533.1-P	Field mustard	nucleus	53.92	49.37
KRH23019	Soybean	nucleus	59.91	49.24
CDX71075	Canola	nucleus	54.38	48.96
Solyc02g086690.2.1	Tomato	nucleus	21.2	48.94
Bra006694.1-P	Field mustard	nucleus	54.38	48.76
TraesCS4B01G143700.1	Wheat	nucleus	53.46	48.74
TraesCS4D01G142300.1	Wheat	nucleus	53.46	48.74
Zm00001d048623_P002	Maize	nucleus	51.15	48.68
GSMUA_Achr11P...	Banana	nucleus	53.92	48.55
Os11t0700500-01	Rice	nucleus	53.0	48.52
GSMUA_Achr5P28350_001	Banana	nucleus	53.0	48.52
KRH29850	Soybean	nucleus	59.45	48.5
KRH24842	Soybean	nucleus	59.45	48.5
CDX88722	Canola	nucleus	53.92	48.35
TraesCS4A01G173300.2	Wheat	nucleus	53.0	48.32
GSMUA_Achr10P...	Banana	nucleus	52.53	48.31
CDX80230	Canola	nucleus	52.53	48.1
AT3G46130.1	Thale cress	nucleus	57.14	48.06
KXG23736	Sorghum	nucleus	52.53	47.5
Zm00001d030678_P001	Maize	nucleus	52.53	47.11
GSMUA_Achr8P02640_001	Banana	nucleus	50.69	46.61
Os12t0567300-00	Rice	nucleus	51.61	46.28
Zm00001d041576_P001	Maize	nucleus	52.07	45.2
CDX86041	Canola	nucleus	57.6	44.96
CDX99125	Canola	nucleus	57.6	44.96
CDX86040	Canola	nucleus	57.14	44.6
GSMUA_Achr8P34340_001	Banana	nucleus	50.23	44.49
GSMUA_Achr7P18200_001	Banana	nucleus	49.31	44.4
TraesCS1D01G043300.1	Wheat	nucleus	49.31	42.13
Solyc10g083900.1.1	Tomato	nucleus	37.33	40.5
TraesCS1B01G055200.1	Wheat	nucleus	49.77	40.3
HORVU1Hr1G008810.3	Barley	nucleus	46.54	39.15
TraesCS1A01G042700.1	Wheat	nucleus	47.0	38.78
TraesCS3D01G540600.1	Wheat	nucleus	45.16	38.28
TraesCS3A01G535100.1	Wheat	nucleus	45.16	37.69
TraesCS3B01G612200.2	Wheat	nucleus	45.62	37.5
Solyc02g067760.2.1	Tomato	nucleus	32.72	36.41
Solyc05g053150.1.1	Tomato	nucleus	38.25	36.24
Os01t0975300-01	Rice	vacuole	34.1	35.24
Solyc09g090790.2.1	Tomato	nucleus	38.25	33.07
KXG29190	Sorghum	nucleus	32.26	33.02
Solyc05g009230.1.1	Tomato	nucleus	40.55	32.12
OQU77249	Sorghum	nucleus	45.16	31.82
Solyc12g099130.1.1	Tomato	nucleus	34.1	31.49
Solyc02g089190.1.1	Tomato	nucleus	34.1	30.96
Zm00001d035605_P001	Maize	nucleus	46.54	30.89
Solyc03g119370.1.1	Tomato	nucleus	39.63	30.71
EES17592	Sorghum	nucleus	47.0	30.54
Solyc12g099120.1.1	Tomato	nucleus	34.1	29.96
Solyc01g057910.2.1	Tomato	nucleus	37.79	28.57
Zm00001d035604_P001	Maize	nucleus	44.7	26.36
Solyc12g099140.1.1	Tomato	nucleus	35.48	25.67
Solyc05g053330.2.1	Tomato	nucleus	37.33	25.47

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4DB18	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF484
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc11g073120.1	EnsemblPlants:Solyc11g073120.1.1	UniParc:UPI0002769FD2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:56213651..56214885

Molecular Weight (calculated)

25939.7 Da

IEP (calculated)

9.246

GRAVY (calculated)

-1.050

Length

217 amino acids

Sequence
(BLAST)

001: MVQEEIMRRG PWTEEEDVQL LFYVKLFGDR RWDFLAKVSG LKRTGKSCRL RWVNYLNPDL KHGKMTPQEE RLVLELHSKW GNRWSRIARK IPGRTDNEIK
101: NYWRTHMRKK AQEQRKKSSV SPSSSSSSSI THEENERNFY DTGGLKLLQV EGEKKSSDQE QDGKSMKVYS MDEIWKDIEL LEENEEKMNK PIMGSILPLW
201: DYSLDSLWKD FDWNNFR

Best Arabidopsis Sequence Match ( AT3G46130.1 )
(BLAST)

001: MKMMQEEGNR KGPWTEQEDI LLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP GLKRGKMTPQ EERLVLELHA KWGNRWSKIA RKLPGRTDNE
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG

Arabidopsis Description

ATMYB48myb domain protein 48 [Source:TAIR;Acc:AT3G46130]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.