Factsheet for Solyc02g089190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003479	Potato	nucleus	86.61	86.97
Solyc02g086690.2.1	Tomato	nucleus	21.34	54.26
VIT_14s0083g01060.t01	Wine grape	nucleus	55.23	53.44
Solyc09g008390.1.1	Tomato	nucleus	27.2	49.62
GSMUA_Achr11P...	Banana	nucleus	43.1	48.36
GSMUA_Achr4P29230_001	Banana	nucleus	40.17	47.06
Bra036202.1-P	Field mustard	nucleus	51.46	46.07
CDY19978	Canola	nucleus	51.46	46.07
Bra025410.1-P	Field mustard	nucleus	51.46	45.9
CDX86354	Canola	nucleus	51.46	45.9
CDX85285	Canola	nucleus	51.46	45.56
CDY00083	Canola	nucleus	51.46	45.56
AT3G30210.1	Thale cress	nucleus	51.46	44.57
Solyc05g053150.1.1	Tomato	nucleus	42.26	44.1
Bra020744.1-P	Field mustard	nucleus	46.86	43.58
CDY45895	Canola	nucleus	46.86	43.58
GSMUA_Achr8P12710_001	Banana	nucleus	41.84	43.29
GSMUA_Achr11P...	Banana	nucleus	41.0	42.61
GSMUA_Achr1P03450_001	Banana	nucleus	43.1	42.39
KRH01379	Soybean	nucleus	45.61	42.25
HORVU0Hr1G005100.1	Barley	nucleus	39.33	41.78
Solyc09g090790.2.1	Tomato	nucleus	42.26	40.24
TraesCS2D01G361600.1	Wheat	nucleus	43.1	40.08
TraesCS2B01G381800.1	Wheat	nucleus	43.1	39.92
HORVU2Hr1G087990.1	Barley	nucleus	43.1	39.77
KRH45095	Soybean	nucleus	45.19	39.27
TraesCS2A01G363800.1	Wheat	nucleus	42.68	39.23
HORVU6Hr1G057670.3	Barley	nucleus	43.93	38.89
Os02t0618400-02	Rice	nucleus	46.86	38.75
Solyc02g067760.2.1	Tomato	nucleus	31.38	38.46
TraesCS6B01G254200.1	Wheat	nucleus	43.93	38.32
KRH01378	Soybean	nucleus	44.35	37.99
TraesCS6A01G227700.1	Wheat	nucleus	43.51	37.96
KXG26684	Sorghum	nucleus	44.77	37.94
Zm00001d048383_P001	Maize	nucleus	36.82	37.93
Os04t0508500-01	Rice	nucleus	44.35	37.72
Zm00001d017243_P001	Maize	nucleus	44.35	37.72
TraesCS6D01G207300.1	Wheat	nucleus	43.1	37.45
Zm00001d025823_P001	Maize	nucleus	43.51	37.41
Os03t0142600-00	Rice	nucleus	38.08	36.84
EES07157	Sorghum	nucleus	44.35	36.81
CDY35782	Canola	nucleus	31.38	36.59
EER92876	Sorghum	nucleus	38.08	35.97
Zm00001d027623_P001	Maize	nucleus	37.24	35.74
TraesCS4B01G344000.1	Wheat	nucleus	35.56	34.55
TraesCS4D01G339100.1	Wheat	nucleus	35.56	34.41
Solyc11g073120.1.1	Tomato	nucleus	30.96	34.1
Solyc10g083900.1.1	Tomato	nucleus	28.45	34.0
TraesCS5A01G512700.1	Wheat	nucleus	34.73	33.47
HORVU4Hr1G084360.3	Barley	nucleus	36.82	32.71
Solyc06g005330.2.1	Tomato	nucleus	32.22	32.63
Solyc12g099130.1.1	Tomato	nucleus	31.8	32.34
Zm00001d051117_P001	Maize	nucleus	35.98	30.82
Solyc12g099120.1.1	Tomato	nucleus	31.38	30.36
Solyc05g009230.1.1	Tomato	nucleus	32.64	28.47
Solyc01g057910.2.1	Tomato	nucleus	33.05	27.53
Solyc12g099140.1.1	Tomato	nucleus	33.89	27.0
Solyc03g119370.1.1	Tomato	nucleus	30.54	26.07
Solyc05g053330.2.1	Tomato	nucleus	32.64	24.53

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4BC71	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF572
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc02g089190.1	EnsemblPlants:Solyc02g089190.1.1	UniParc:UPI0002768A80

Description

No Description!

Coordinates

chr2:+:51067701..51068603

Molecular Weight (calculated)

27626.6 Da

IEP (calculated)

6.936

GRAVY (calculated)

-0.757

Length

239 amino acids

Sequence
(BLAST)

001: MVRGMMGWGV NTDEQGWRKG PWTPEEDKLL SEYVNLHGEG RWSSVSRCAG LNRTGKSCRL RWVNYLRPGL KRGHITPQEE GIIIELHALW GNKWSTIARY
101: LPGRTDNEIK NYWRTHFKTK VKVPVKQDKK RILRQMRNQT QQNYTNVSTT DMSPQAEEVI MIKSDDDNMF SINYNNDEDP VELPPVTTIS DTWTENFPMD
201: GLWNIDDELK VAIQNQAATA NCSYGTDYAV NLYNGGFIF

Best Arabidopsis Sequence Match ( AT3G30210.1 )
(BLAST)

001: MLDWGVQGHH QKHDHDIYQQ QHQQQGCRKG PWTLEEDKLL AEYVTSHGEG RWSTVAKCAG LNRSGKSCRL RWVNYLRPGL KRGQITPQEE GIILELHSLW
101: GNKWSTIARY LPGRTDNEIK NYWRTHYKKN QKSSSKQDKV KKSLSRKQQQ VDLKPQPQAQ SENHQSQLVS QDHMNIDNDH NIASSLYYPT SVFDDKLYMP
201: QSVATTSSDH SMIDEGHLWG SLWNLDEDDP HSFGGGSGQG TAADIDEKFP DSGIEAPSCG SGDYSYTGVY MGGYIF

Arabidopsis Description

ATMYB121MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LRU5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.