Factsheet for Solyc01g057910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022600	Potato	nucleus	91.64	88.55
GSMUA_Achr4P19990_001	Banana	nucleus	35.19	78.91
CDX85422	Canola	nucleus	48.78	76.5
CDX86220	Canola	nucleus	48.78	72.54
GSMUA_Achr5P21090_001	Banana	nucleus	45.3	71.43
Solyc02g086690.2.1	Tomato	nucleus	23.34	71.28
GSMUA_Achr3P12730_001	Banana	nucleus	37.63	61.71
Solyc12g099130.1.1	Tomato	nucleus	49.13	60.0
VIT_05s0077g00500.t01	Wine grape	nucleus	62.72	58.82
Solyc12g099120.1.1	Tomato	nucleus	50.17	58.3
Bra001202.1-P	Field mustard	nucleus	59.93	56.58
Solyc12g099140.1.1	Tomato	nucleus	58.19	55.67
GSMUA_Achr11P...	Banana	nucleus	49.83	54.58
GSMUA_AchrUn_...	Banana	nucleus	50.52	54.31
Bra040274.1-P	Field mustard	nucleus	60.28	54.06
CDY34949	Canola	nucleus	60.28	54.06
CDX99864	Canola	nucleus	60.28	54.06
GSMUA_Achr8P10800_001	Banana	nucleus	48.08	53.91
GSMUA_Achr11P...	Banana	nucleus	49.48	53.79
CDY33891	Canola	nucleus	58.54	52.83
CDY05611	Canola	nucleus	58.54	52.83
Bra020624.1-P	Field mustard	nucleus	58.54	52.83
CDY24688	Canola	nucleus	58.54	52.66
GSMUA_Achr1P24960_001	Banana	nucleus	49.48	52.59
GSMUA_Achr9P16640_001	Banana	nucleus	47.39	52.31
Solyc02g067760.2.1	Tomato	nucleus	35.54	52.31
CDY05270	Canola	nucleus	58.54	52.17
Solyc05g053330.2.1	Tomato	nucleus	57.49	51.89
Bra029582.1-P	Field mustard	nucleus	58.19	51.86
KRH02414	Soybean	nucleus	57.14	50.93
Bra010022.1-P	Field mustard	nucleus	56.79	50.46
Bra010021.1-P	Field mustard	nucleus	56.79	50.46
GSMUA_AchrUn_...	Banana	nucleus	49.13	50.18
CDY70282	Canola	nucleus	51.22	50.0
KRH50671	Soybean	nucleus	56.1	49.54
GSMUA_Achr8P29910_001	Banana	nucleus	46.34	49.44
Solyc09g008390.1.1	Tomato	nucleus	21.95	48.09
GSMUA_AchrUn_...	Banana	nucleus	45.99	48.0
TraesCS4A01G172200.1	Wheat	nucleus	48.08	47.75
KRH36928	Soybean	nucleus	56.1	47.35
TraesCSU01G069000.1	Wheat	nucleus	47.74	47.24
TraesCS4D01G142900.1	Wheat	nucleus	48.08	47.1
KRG97314	Soybean	nucleus	55.4	46.63
HORVU4Hr1G028780.1	Barley	nucleus	47.39	46.42
TraesCS5B01G093000.1	Wheat	nucleus	44.95	46.4
TraesCS5D01G099100.1	Wheat	nucleus	44.95	46.4
HORVU5Hr1G022690.1	Barley	nucleus	44.95	45.74
TraesCS5A01G087100.1	Wheat	nucleus	44.25	45.68
TraesCS3D01G413700.1	Wheat	nucleus	45.64	44.71
TraesCS4A01G124900.1	Wheat	nucleus	49.48	44.51
TraesCS4D01G181100.1	Wheat	nucleus	49.13	44.2
TraesCS4B01G179500.1	Wheat	nucleus	48.08	43.4
GSMUA_Achr7P05570_001	Banana	nucleus	41.12	43.38
Zm00001d028930_P001	Maize	nucleus	50.17	42.86
KXG39500	Sorghum	nucleus	49.83	42.56
EES00624	Sorghum	nucleus	45.3	42.48
TraesCS3D01G014800.1	Wheat	nucleus	41.12	42.45
TraesCS3A01G418100.1	Wheat	nucleus	45.3	42.21
TraesCS3B01G453300.1	Wheat	nucleus	44.95	42.02
TraesCS1D01G078600.1	Wheat	nucleus	47.04	41.8
TraesCS1A01G076200.1	Wheat	nucleus	47.04	41.67
Zm00001d040594_P001	Maize	nucleus	43.9	41.58
CDX74100	Canola	nucleus	48.78	41.54
TraesCS1B01G094500.1	Wheat	nucleus	47.04	41.41
Solyc05g009230.1.1	Tomato	nucleus	39.37	41.24
HORVU1Hr1G016420.1	Barley	nucleus	46.69	41.23
GSMUA_Achr11P...	Banana	nucleus	48.43	40.41
Solyc03g119370.1.1	Tomato	nucleus	39.37	40.36
GSMUA_Achr3P08370_001	Banana	nucleus	39.72	39.72
Zm00001d048647_P001	Maize	nucleus	48.43	39.49
EES17207	Sorghum	nucleus	46.34	39.47
Zm00001d047579_P001	Maize	nucleus	47.74	39.26
KXG36991	Sorghum	nucleus	46.69	39.18
HORVU3Hr1G092820.1	Barley	nucleus	44.95	38.97
Zm00001d009066_P001	Maize	nucleus	42.51	38.36
EES10257	Sorghum	nucleus	48.78	38.36
Zm00001d007191_P001	Maize	nucleus	46.34	38.33
HORVU4Hr1G052490.5	Barley	nucleus, plastid	49.13	38.21
Solyc11g073120.1.1	Tomato	nucleus	28.57	37.79
Zm00001d030644_P001	Maize	nucleus	45.99	37.61
Solyc05g053150.1.1	Tomato	nucleus	29.97	37.55
TraesCS2A01G097200.1	Wheat	nucleus	41.81	36.81
TraesCS2D01G096000.1	Wheat	nucleus	41.81	36.59
TraesCS2B01G112600.1	Wheat	nucleus	42.16	36.45
Zm00001d024726_P001	Maize	nucleus	42.86	34.65
Zm00001d010933_P001	Maize	nucleus	44.25	34.6
Solyc10g083900.1.1	Tomato	nucleus	24.04	34.5
Solyc09g090790.2.1	Tomato	nucleus	29.62	33.86
Solyc02g089190.1.1	Tomato	nucleus	27.53	33.05
Os05t0132700-01	Rice	nucleus	24.74	33.02
KXG21220	Sorghum	nucleus	46.69	33.0
Solyc06g005330.2.1	Tomato	nucleus	26.83	32.63
HORVU2Hr1G016380.1	Barley	nucleus	40.07	31.68
Zm00001d024725_P001	Maize	nucleus	44.6	31.53
KXG21221	Sorghum	nucleus	45.3	27.25
CDY58600	Canola	nucleus	22.65	20.12

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4AW02	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF743
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc01g057910.2	EnsemblPlants:Solyc01g057910.2.1	UniParc:UPI0002761EFE
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:64321603..64323304

Molecular Weight (calculated)

33025.6 Da

IEP (calculated)

7.085

GRAVY (calculated)

-0.730

Length

287 amino acids

Sequence
(BLAST)

001: MDHQHVKVNL SRGDANNKNE DDMDLRRGPW TVEEDLTLMN YIAHHGEGRW NTLARCAGLK RTGKSCRLRW LNYLRPDVRR GNITLEEQLL ILELHSRWGN
101: RWSKIAQHLP GRTDNEIKNY WRTRVQKHAK QLKCDVNSKQ FKDTMRYLWM PRLVERIQAA AGAGASTSSE VINPQNIVQI DHNTCVTNSS TATASSDNSF
201: GTPVSDLTDC CYNYPQQQQD CFQFVGESLI SPTGYFHHAL EFQGAAASAI DHQQNTTQWM DGANFSDNLW NIEDMWFLQQ QLNNNVV

Best Arabidopsis Sequence Match ( AT5G49620.1 )
(BLAST)

001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF

Arabidopsis Description

AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.