Factsheet for GSMUA_AchrUn_randomP27010_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P19990_001	Banana	nucleus	35.21	73.44
GSMUA_Achr3P01370_001	Banana	nucleus	33.71	72.58
GSMUA_Achr5P21090_001	Banana	nucleus	47.19	69.23
CDX85422	Canola	nucleus	46.07	67.21
CDX86220	Canola	nucleus	46.44	64.25
GSMUA_Achr11P...	Banana	nucleus	55.81	56.87
GSMUA_Achr3P12730_001	Banana	nucleus	36.7	56.0
GSMUA_Achr9P16640_001	Banana	nucleus	54.31	55.77
GSMUA_Achr8P10800_001	Banana	nucleus	52.81	55.08
GSMUA_Achr10P...	Banana	nucleus	35.96	54.86
GSMUA_Achr11P...	Banana	nucleus	53.93	54.55
PGSC0003DMT400011750	Potato	nucleus	45.69	53.04
Solyc12g099130.1.1	Tomato	nucleus	46.44	52.77
PGSC0003DMT400011745	Potato	nucleus	46.07	52.56
GSMUA_Achr1P21020_001	Banana	nucleus	38.2	52.31
GSMUA_AchrUn_...	Banana	nucleus	54.31	51.6
Solyc12g099120.1.1	Tomato	nucleus	47.57	51.42
GSMUA_Achr1P24960_001	Banana	nucleus	51.31	50.74
Solyc01g057910.2.1	Tomato	nucleus	54.31	50.52
PGSC0003DMT400022600	Potato	nucleus	54.31	48.82
VIT_05s0077g00500.t01	Wine grape	nucleus	55.43	48.37
GSMUA_Achr8P29910_001	Banana	nucleus	48.69	48.33
GSMUA_Achr1P27270_001	Banana	nucleus	35.21	47.96
GSMUA_Achr6P27290_001	Banana	nucleus	34.83	47.69
AT1G48000.1	Thale cress	nucleus	43.07	47.33
GSMUA_AchrUn_...	Banana	nucleus	48.31	46.91
PGSC0003DMT400011748	Potato	nucleus	50.94	46.1
Solyc12g099140.1.1	Tomato	nucleus	50.19	44.67
CDY33891	Canola	nucleus	52.81	44.34
Bra020624.1-P	Field mustard	nucleus	52.81	44.34
CDY05611	Canola	nucleus	52.81	44.34
Bra001202.1-P	Field mustard	nucleus	50.19	44.08
KRH02414	Soybean	nucleus	52.43	43.48
Solyc05g053330.2.1	Tomato	nucleus	51.69	43.4
AT5G49620.2	Thale cress	nucleus	52.06	43.3
KRH50671	Soybean	nucleus	52.43	43.08
PGSC0003DMT400069841	Potato	nucleus	52.06	42.9
CDX99864	Canola	nucleus	51.31	42.81
Bra040274.1-P	Field mustard	nucleus	51.31	42.81
CDY34949	Canola	nucleus	51.31	42.81
Bra010022.1-P	Field mustard	nucleus	51.69	42.72
Bra010021.1-P	Field mustard	nucleus	51.69	42.72
GSMUA_Achr7P05570_001	Banana	nucleus	43.45	42.65
CDY24688	Canola	nucleus	50.94	42.63
AT3G06490.1	Thale cress	nucleus	51.31	42.41
GSMUA_Achr8P18460_001	Banana	nucleus	39.33	42.17
GSMUA_Achr11P...	Banana	nucleus	54.31	42.15
KRH36928	Soybean	nucleus	53.56	42.06
Bra029582.1-P	Field mustard	nucleus	50.56	41.93
CDY05270	Canola	nucleus	50.56	41.93
KRG97314	Soybean	nucleus	52.43	41.06
GSMUA_Achr3P08370_001	Banana	nucleus	43.07	40.07
GSMUA_Achr4P29230_001	Banana	nucleus	29.96	39.22
CDY70282	Canola	nucleus	43.07	39.12
GSMUA_Achr2P22640_001	Banana	nucleus	42.7	39.04
GSMUA_Achr9P28370_001	Banana	nucleus	30.71	38.32
GSMUA_Achr6P09760_001	Banana	nucleus	43.82	37.99
GSMUA_Achr3P21060_001	Banana	nucleus	43.07	37.95
GSMUA_Achr11P...	Banana	nucleus	43.82	37.14
GSMUA_Achr11P...	Banana	nucleus	29.21	36.62
GSMUA_Achr2P16200_001	Banana	nucleus	28.09	36.59
GSMUA_Achr6P15370_001	Banana	nucleus	28.46	36.36
GSMUA_Achr10P...	Banana	nucleus	28.84	36.32
GSMUA_Achr10P...	Banana	nucleus	30.34	35.84
GSMUA_Achr5P28350_001	Banana	nucleus	30.71	34.6
GSMUA_Achr11P...	Banana	nucleus	29.59	34.35
GSMUA_Achr10P...	Banana	nucleus	30.34	34.32
GSMUA_Achr8P02640_001	Banana	nucleus	30.34	34.32
GSMUA_Achr1P03450_001	Banana	nucleus	31.09	34.16
GSMUA_Achr8P12710_001	Banana	nucleus	28.84	33.33
GSMUA_Achr11P...	Banana	nucleus	29.59	32.78
GSMUA_Achr7P18200_001	Banana	nucleus	29.59	32.78
CDX74100	Canola	nucleus	40.45	32.05
GSMUA_Achr8P34340_001	Banana	nucleus	29.21	31.84
CDY58600	Canola	nucleus	28.09	23.22
GSMUA_Achr9P07000_001	Banana	nucleus	40.07	8.51

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP27010_001	EnsemblPlants:GSMUA_AchrUn_randomT27010_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG27010_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF743	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002950406	UniProt:M0UCQ9	MapMan:15.5.2.1	:	:

Description

Transcription factor (Fragment) [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG27010_001]

Coordinates

chrchrUn_random:-:132135986..132136973

Molecular Weight (calculated)

31146.2 Da

IEP (calculated)

5.798

GRAVY (calculated)

-0.860

Length

267 amino acids

Sequence
(BLAST)

001: MELHDDARSS DSPSSEEDDL RKGPWTVEED LLLMNYIAVH GEGRWNSVAR CSGLKRTGKS CRLRWLNYLR PDVRHGNITP EEQLLILELH SSWGNRWSKI
101: AQHLPGRTDN EIKNYWRTKV QKHAKQLQCD VNSKQFKDIM RYLWMPRLME RIRAASVHQH ERIANSETHE LVQEKSSAFG SSDAESFEMQ DPSPAASDCF
201: AVSTQGSDHD MTGDWFEKSQ FSTWWRETLP SPGSYDDVFG LVDFDQSRWG QSLFGMDDDM WLRRQQF

Best Arabidopsis Sequence Match ( AT1G48000.1 )
(BLAST)

001: MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ

Arabidopsis Description

MYB112MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q94CJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.