Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26800702
|
gfp PMID:
26800702
doi
State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China jiangyq@nwafu.edu.cn., State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001202.1-P | Field mustard | nucleus | 87.42 | 84.54 |
| CDX74100 | Canola | nucleus | 85.03 | 74.18 |
| CDX99864 | Canola | nucleus | 78.57 | 72.19 |
| CDY34949 | Canola | nucleus | 78.57 | 72.19 |
| CDY24688 | Canola | nucleus | 73.13 | 67.4 |
| CDY05270 | Canola | nucleus | 72.79 | 66.46 |
| CDX85422 | Canola | nucleus | 40.14 | 64.48 |
| GSMUA_Achr4P19990_001 | Banana | nucleus | 26.53 | 60.94 |
| CDX86220 | Canola | nucleus | 39.8 | 60.62 |
| CDY33891 | Canola | nucleus | 62.93 | 58.18 |
| CDY05611 | Canola | nucleus | 62.59 | 57.86 |
| GSMUA_Achr5P21090_001 | Banana | nucleus | 34.35 | 55.49 |
| PGSC0003DMT400011745 | Potato | nucleus | 42.18 | 52.99 |
| CDX86221 | Canola | nucleus | 12.59 | 52.86 |
| PGSC0003DMT400011750 | Potato | nucleus | 41.16 | 52.61 |
| PGSC0003DMT400022600 | Potato | nucleus | 52.38 | 51.85 |
| Solyc01g057910.2.1 | Tomato | nucleus | 50.0 | 51.22 |
| Solyc12g099130.1.1 | Tomato | nucleus | 40.48 | 50.64 |
| Solyc12g099120.1.1 | Tomato | nucleus | 41.84 | 49.8 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 49.32 | 47.39 |
| GSMUA_Achr8P10800_001 | Banana | nucleus | 39.8 | 45.7 |
| GSMUA_Achr11P... | Banana | nucleus | 40.14 | 44.7 |
| GSMUA_Achr11P... | Banana | nucleus | 39.8 | 44.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.18 | 44.13 |
| PGSC0003DMT400011748 | Potato | nucleus | 44.22 | 44.07 |
| GSMUA_Achr9P16640_001 | Banana | nucleus | 38.78 | 43.85 |
| GSMUA_Achr3P12730_001 | Banana | nucleus | 25.85 | 43.43 |
| CDY00146 | Canola | nucleus | 24.49 | 43.37 |
| GSMUA_Achr1P24960_001 | Banana | nucleus | 39.8 | 43.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.12 | 43.07 |
| Solyc12g099140.1.1 | Tomato | nucleus | 43.2 | 42.33 |
| CDX95420 | Canola | nucleus | 32.65 | 41.38 |
| GSMUA_Achr8P29910_001 | Banana | nucleus | 37.76 | 41.26 |
| PGSC0003DMT400069841 | Potato | nucleus | 45.24 | 41.05 |
| Solyc05g053330.2.1 | Tomato | nucleus | 44.22 | 40.88 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.41 | 40.0 |
| CDY27504 | Canola | nucleus | 36.73 | 39.71 |
| CDY37512 | Canola | nucleus | 25.85 | 37.81 |
| TraesCS5B01G093000.1 | Wheat | nucleus | 35.37 | 37.41 |
| TraesCS5D01G099100.1 | Wheat | nucleus | 35.37 | 37.41 |
| CDY49063 | Canola | nucleus | 26.19 | 37.2 |
| TraesCS5A01G087100.1 | Wheat | nucleus | 35.03 | 37.05 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 36.39 | 37.02 |
| TraesCS4A01G124900.1 | Wheat | nucleus | 40.14 | 36.99 |
| TraesCS4D01G181100.1 | Wheat | nucleus | 40.14 | 36.99 |
| TraesCSU01G069000.1 | Wheat | nucleus | 36.39 | 36.9 |
| HORVU5Hr1G022690.1 | Barley | nucleus | 35.37 | 36.88 |
| CDY58599 | Canola | nucleus | 13.27 | 36.79 |
| TraesCS4B01G179500.1 | Wheat | nucleus | 39.8 | 36.79 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 36.39 | 36.52 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 36.39 | 36.52 |
| TraesCS3D01G413700.1 | Wheat | nucleus | 35.71 | 35.84 |
| CDX91944 | Canola | nucleus | 25.17 | 35.75 |
| GSMUA_Achr7P05570_001 | Banana | nucleus | 32.65 | 35.29 |
| KXG39500 | Sorghum | nucleus | 40.14 | 35.12 |
| CDY20036 | Canola | nucleus | 27.55 | 34.91 |
| CDX74303 | Canola | nucleus | 24.49 | 34.62 |
| TraesCS3B01G453300.1 | Wheat | nucleus | 36.05 | 34.53 |
| Zm00001d028930_P001 | Maize | nucleus | 39.46 | 34.52 |
| CDY44433 | Canola | nucleus | 26.87 | 34.05 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 35.37 | 33.77 |
| CDX86471 | Canola | nucleus | 26.53 | 33.62 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 31.63 | 33.45 |
| GSMUA_Achr11P... | Banana | nucleus | 39.12 | 33.43 |
| EES00624 | Sorghum | nucleus | 34.69 | 33.33 |
| CDX80085 | Canola | nucleus | 22.45 | 33.17 |
| Zm00001d040594_P001 | Maize | nucleus | 34.01 | 33.0 |
| TraesCS1A01G076200.1 | Wheat | nucleus | 36.05 | 32.72 |
| Zm00001d047579_P001 | Maize | nucleus | 38.78 | 32.66 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 36.05 | 32.62 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 35.71 | 32.51 |
| CDY42115 | Canola | nucleus | 30.61 | 32.49 |
| KXG36991 | Sorghum | nucleus | 37.76 | 32.46 |
| TraesCS1B01G094500.1 | Wheat | nucleus | 35.71 | 32.21 |
| CDX96033 | Canola | nucleus | 30.61 | 31.69 |
| Os05t0132700-01 | Rice | nucleus | 23.13 | 31.63 |
| CDX84981 | Canola | nucleus | 30.95 | 31.6 |
| CDY01906 | Canola | nucleus | 30.61 | 31.58 |
| HORVU4Hr1G052490.5 | Barley | nucleus, plastid | 39.46 | 31.44 |
| Zm00001d007191_P001 | Maize | nucleus | 37.07 | 31.41 |
| CDY69488 | Canola | nucleus | 29.59 | 31.41 |
| CDY69953 | Canola | nucleus | 29.93 | 31.21 |
| Zm00001d009066_P001 | Maize | nucleus | 33.67 | 31.13 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 35.03 | 31.12 |
| CDY03859 | Canola | nucleus | 30.27 | 31.01 |
| CDY70097 | Canola | nucleus | 24.49 | 30.51 |
| GSMUA_Achr3P08370_001 | Banana | nucleus | 29.59 | 30.31 |
| CDX71075 | Canola | nucleus | 24.83 | 30.29 |
| CDY12705 | Canola | nucleus | 29.25 | 30.18 |
| Zm00001d048647_P001 | Maize | nucleus | 36.05 | 30.11 |
| TraesCS2D01G096000.1 | Wheat | nucleus | 32.99 | 29.57 |
| CDY54094 | Canola | nucleus | 28.57 | 29.47 |
| TraesCS2A01G097200.1 | Wheat | nucleus | 32.65 | 29.45 |
| TraesCS2B01G112600.1 | Wheat | nucleus | 32.99 | 29.22 |
| CDX80230 | Canola | nucleus | 23.47 | 29.11 |
| CDY49581 | Canola | nucleus | 23.47 | 29.11 |
| CDX88722 | Canola | nucleus | 23.47 | 28.51 |
| EES10257 | Sorghum | nucleus | 35.37 | 28.49 |
| EES17207 | Sorghum | nucleus | 32.31 | 28.19 |
| Zm00001d010933_P001 | Maize | nucleus | 35.03 | 28.07 |
| Zm00001d030644_P001 | Maize | nucleus | 33.33 | 27.92 |
| Zm00001d024726_P001 | Maize | nucleus | 31.97 | 26.48 |
| CDY61190 | Canola | nucleus | 23.13 | 26.05 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 31.63 | 25.62 |
| CDX77436 | Canola | nucleus | 22.45 | 25.38 |
| CDY45895 | Canola | nucleus | 22.11 | 25.29 |
| CDX93006 | Canola | nucleus | 23.47 | 25.18 |
| CDX86354 | Canola | nucleus | 22.79 | 25.0 |
| CDY35782 | Canola | nucleus | 17.35 | 24.88 |
| KXG21220 | Sorghum | nucleus | 34.35 | 24.88 |
| CDX94829 | Canola | nucleus | 22.79 | 24.54 |
| CDY64694 | Canola | nucleus | 22.79 | 24.45 |
| CDY49231 | Canola | nucleus | 22.11 | 24.25 |
| Zm00001d024725_P001 | Maize | nucleus | 33.33 | 24.14 |
| CDX85285 | Canola | nucleus | 22.11 | 24.07 |
| CDX86040 | Canola | nucleus | 22.45 | 23.74 |
| CDX86041 | Canola | nucleus | 22.45 | 23.74 |
| CDX99125 | Canola | nucleus | 22.45 | 23.74 |
| CDY00083 | Canola | nucleus | 21.77 | 23.7 |
| CDX73572 | Canola | nucleus | 19.73 | 23.67 |
| CDX78153 | Canola | nucleus | 19.73 | 23.67 |
| CDY19978 | Canola | nucleus | 21.43 | 23.6 |
| CDX67561 | Canola | nucleus | 18.71 | 22.92 |
| CDY13311 | Canola | nucleus | 18.71 | 22.54 |
| KXG21221 | Sorghum | nucleus | 33.33 | 20.55 |
| CDY58600 | Canola | nucleus | 21.77 | 19.81 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078JXF7 | UniProt:A0A078JXF7 | EnsemblPlants:CDY70282 | ProteinID:CDY70282 |
| ProteinID:CDY70282.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00097678001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:IPR017930 | InterPro:Myb-like_dom | InterPro:Myb_dom | PFAM:PF00249 |
| PFscan:PS50090 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF743 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EEA017 | SEG:seg | : |
Description
BnaCnng67570DBnaCnng67570D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JXF7]
Coordinates
chrLK041668:+:3..1430
Molecular Weight (calculated)
34101.8 Da
IEP (calculated)
4.998
GRAVY (calculated)
-0.607
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: YESKSAYLSC FFVLLFLISK NNSIPINQIL MNLVRCFSRL QRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN
101: YWRTRVQKHA KQLKCDVNSQ QFKDTMKYMW MPRLVERIQS ASASAASLIS TTGSATTSSC ITTSNNEFMT YDYNNNNSIG ERLGVMNNNN YITLENSSVA
201: VSPVSDLTDY YNAPKPNPDQ NLVGPQMLPD NYFDYSGLLD EDLTATHEQS NLDWFENIDE VVSSSSESLW NIGESDEDFW FCQQQQQFNN NNDF
101: YWRTRVQKHA KQLKCDVNSQ QFKDTMKYMW MPRLVERIQS ASASAASLIS TTGSATTSSC ITTSNNEFMT YDYNNNNSIG ERLGVMNNNN YITLENSSVA
201: VSPVSDLTDY YNAPKPNPDQ NLVGPQMLPD NYFDYSGLLD EDLTATHEQS NLDWFENIDE VVSSSSESLW NIGESDEDFW FCQQQQQFNN NNDF
001: MDEKGRSLKN NNMEDEMDLK RGPWTAEEDF KLMNYIATNG EGRWNSLSRC AGLQRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
Arabidopsis Description
MYB108Transcription factor MYB108 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDE1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.