Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26800702
|
gfp PMID:
26800702
doi
State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China jiangyq@nwafu.edu.cn., State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004297.1-P | Field mustard | nucleus | 99.65 | 99.65 |
| CDY01906 | Canola | nucleus | 97.18 | 96.84 |
| CDY69488 | Canola | nucleus | 84.51 | 86.64 |
| CDY69953 | Canola | nucleus | 85.21 | 85.82 |
| CDY12705 | Canola | nucleus | 83.45 | 83.16 |
| CDY54094 | Canola | nucleus | 83.1 | 82.81 |
| AT1G68320.1 | Thale cress | nucleus | 81.34 | 80.77 |
| GSMUA_Achr3P01370_001 | Banana | nucleus | 33.1 | 75.81 |
| CDY58599 | Canola | nucleus | 26.06 | 69.81 |
| CDY42115 | Canola | nucleus | 58.45 | 59.93 |
| GSMUA_Achr10P... | Banana | nucleus | 36.62 | 59.43 |
| CDY03859 | Canola | nucleus | 59.86 | 59.23 |
| CDX84981 | Canola | nucleus | 59.15 | 58.33 |
| CDX85422 | Canola | nucleus | 36.62 | 56.83 |
| CDX86220 | Canola | nucleus | 36.62 | 53.89 |
| GSMUA_Achr1P21020_001 | Banana | nucleus | 36.62 | 53.33 |
| GSMUA_Achr8P18460_001 | Banana | nucleus | 40.85 | 46.59 |
| Solyc03g119370.1.1 | Tomato | nucleus | 45.42 | 46.07 |
| PGSC0003DMT400014383 | Potato | nucleus | 44.72 | 45.68 |
| VIT_01s0011g03730.t01 | Wine grape | nucleus | 45.07 | 44.44 |
| CDY00146 | Canola | nucleus | 25.7 | 43.98 |
| KRG90844 | Soybean | nucleus | 47.18 | 43.65 |
| CDY37512 | Canola | nucleus | 30.28 | 42.79 |
| KRH35934 | Soybean | nucleus | 46.13 | 42.53 |
| CDY49063 | Canola | nucleus | 30.28 | 41.55 |
| CDX95420 | Canola | nucleus | 33.45 | 40.95 |
| GSMUA_Achr3P21060_001 | Banana | nucleus | 43.31 | 40.59 |
| CDY20036 | Canola | nucleus | 33.1 | 40.52 |
| GSMUA_Achr6P09760_001 | Banana | nucleus | 43.66 | 40.26 |
| CDY44433 | Canola | nucleus | 32.75 | 40.09 |
| CDX86471 | Canola | nucleus | 32.75 | 40.09 |
| GSMUA_Achr2P22640_001 | Banana | nucleus | 41.2 | 40.07 |
| CDX91944 | Canola | nucleus | 28.87 | 39.61 |
| CDX74303 | Canola | nucleus | 28.87 | 39.42 |
| GSMUA_Achr11P... | Banana | nucleus | 41.9 | 37.78 |
| CDY27504 | Canola | nucleus | 35.21 | 36.76 |
| Os01t0128000-01 | Rice | nucleus | 44.72 | 36.29 |
| TraesCS3D01G036200.1 | Wheat | nucleus | 42.96 | 35.47 |
| Zm00001d040019_P001 | Maize | nucleus | 45.07 | 35.36 |
| TraesCS3A01G044700.1 | Wheat | nucleus | 42.96 | 35.26 |
| Zm00001d008528_P001 | Maize | nucleus | 44.72 | 35.08 |
| CDY58600 | Canola | nucleus | 39.79 | 34.98 |
| CDY33891 | Canola | nucleus | 39.08 | 34.91 |
| CDY05611 | Canola | nucleus | 39.08 | 34.91 |
| TraesCS3B01G039100.1 | Wheat | nucleus | 42.96 | 34.76 |
| HORVU3Hr1G004050.1 | Barley | nucleus | 42.96 | 34.76 |
| CDX80085 | Canola | nucleus | 24.3 | 34.67 |
| CDY24688 | Canola | nucleus | 38.38 | 34.17 |
| CDY05270 | Canola | nucleus | 38.73 | 34.16 |
| CDY70097 | Canola | nucleus | 28.17 | 33.9 |
| CDY49581 | Canola | nucleus | 28.17 | 33.76 |
| CDY34949 | Canola | nucleus | 38.03 | 33.75 |
| CDX99864 | Canola | nucleus | 38.03 | 33.75 |
| CDX80230 | Canola | nucleus | 27.82 | 33.33 |
| CDX77436 | Canola | nucleus | 30.28 | 33.08 |
| CDX71075 | Canola | nucleus | 27.82 | 32.78 |
| CDX88722 | Canola | nucleus | 27.82 | 32.64 |
| EES00381 | Sorghum | nucleus | 44.37 | 32.39 |
| CDY61190 | Canola | nucleus | 29.58 | 32.18 |
| CDY49231 | Canola | nucleus | 30.28 | 32.09 |
| CDX94829 | Canola | nucleus | 30.28 | 31.5 |
| CDX93006 | Canola | nucleus | 30.28 | 31.39 |
| CDY64694 | Canola | nucleus | 29.93 | 31.02 |
| CDY45895 | Canola | nucleus | 27.82 | 30.74 |
| CDY70282 | Canola | nucleus | 31.69 | 30.61 |
| CDX86041 | Canola | nucleus | 29.23 | 29.86 |
| CDX99125 | Canola | nucleus | 29.23 | 29.86 |
| CDX86040 | Canola | nucleus | 28.87 | 29.5 |
| CDX86354 | Canola | nucleus | 27.82 | 29.48 |
| CDX85285 | Canola | nucleus | 27.82 | 29.26 |
| CDY00083 | Canola | nucleus | 27.46 | 28.89 |
| CDY19978 | Canola | nucleus | 27.11 | 28.84 |
| CDX73572 | Canola | nucleus | 23.24 | 26.94 |
| CDY13311 | Canola | nucleus | 22.89 | 26.64 |
| CDX78153 | Canola | nucleus | 22.89 | 26.53 |
| CDX67561 | Canola | nucleus | 22.18 | 26.25 |
| CDX74100 | Canola | nucleus | 29.93 | 25.22 |
| CDY35782 | Canola | nucleus | 16.55 | 22.93 |
| CDX86221 | Canola | nucleus | 2.82 | 11.43 |
Protein Annotations
| EnsemblPlants:CDX96033 | EnsemblPlantsGene:GSBRNA2T00102070001 | Gene3D:1.10.10.60 | GO:A0A078E9K8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF510 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX96033 | ProteinID:CDX96033.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF0610 | MapMan:15.5.2.1 | : |
Description
BnaA07g26980D
Coordinates
chrLK031892:-:740084..741464
Molecular Weight (calculated)
32786.2 Da
IEP (calculated)
4.936
GRAVY (calculated)
-0.840
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSMKNKSC KGSEEAELRR GPWTLEEDTL LTTYILHNGE GRWNLAAKCA GLKRTGKSCR LRWLNYLKPD IRRGNLTPQE QLLILELHSK WGNRWSKIAQ
101: YLPGRTDNEI KNYWRTRVQK QARQLNIESN SDKFFDAVRS FWVPRLIEKM EQNSSASYAC PQNNNSNNNN SSLLPPSQTF ESMSTQTYQD LSGLSNMDGS
201: SSSSAFMPDL MTVPHFMDPN TIIDGSMCYH EDNAQELSGY IPGTEEYYYM GNSDISTECQ VAEAYENVTQ DPMWNMDDIW QFRE
101: YLPGRTDNEI KNYWRTRVQK QARQLNIESN SDKFFDAVRS FWVPRLIEKM EQNSSASYAC PQNNNSNNNN SSLLPPSQTF ESMSTQTYQD LSGLSNMDGS
201: SSSSAFMPDL MTVPHFMDPN TIIDGSMCYH EDNAQELSGY IPGTEEYYYM GNSDISTECQ VAEAYENVTQ DPMWNMDDIW QFRE
001: MENSMKKKKS FKESEDEELR RGPWTLEEDT LLTNYILHNG EGRWNHVAKC AGLKRTGKSC RLRWLNYLKP DIRRGNLTPQ EQLLILELHS KWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTT YCCPQNNNNN SLLLPSQSHD SLSMQKDIDY SGFSNIDGSS
201: STSTCMSHLT TVPHFMDQSN TNIIDGSMCF HEGNVQEFGG YVPGMEDYMV NSDISMECHV ADGYSAYEDV TQDPMWNVDD IWQFRE
101: QYLPGRTDNE IKNYWRTRVQ KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTT YCCPQNNNNN SLLLPSQSHD SLSMQKDIDY SGFSNIDGSS
201: STSTCMSHLT TVPHFMDQSN TNIIDGSMCF HEGNVQEFGG YVPGMEDYMV NSDISMECHV ADGYSAYEDV TQDPMWNVDD IWQFRE
Arabidopsis Description
MYB62Transcription factor MYB62 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9G7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.