Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78153 | Canola | nucleus | 91.43 | 91.43 |
| CDX67561 | Canola | nucleus | 82.86 | 84.58 |
| AT3G53200.1 | Thale cress | nucleus | 79.59 | 81.93 |
| CDY13311 | Canola | nucleus | 80.82 | 81.15 |
| VIT_08s0007g04830.t01 | Wine grape | nucleus | 35.1 | 69.92 |
| Solyc09g008390.1.1 | Tomato | nucleus | 30.61 | 57.25 |
| PGSC0003DMT400072687 | Potato | nucleus | 31.02 | 55.88 |
| KRH32555 | Soybean | nucleus | 42.04 | 44.4 |
| KRH19953 | Soybean | nucleus | 40.82 | 43.67 |
| Solyc10g083900.1.1 | Tomato | nucleus | 34.69 | 42.5 |
| CDY58599 | Canola | nucleus | 18.37 | 42.45 |
| CDX85422 | Canola | nucleus | 27.76 | 37.16 |
| CDX71075 | Canola | nucleus | 35.1 | 35.68 |
| CDX88722 | Canola | nucleus | 35.1 | 35.54 |
| CDX80230 | Canola | nucleus | 34.29 | 35.44 |
| CDY49581 | Canola | nucleus | 34.29 | 35.44 |
| CDX86220 | Canola | nucleus | 27.76 | 35.23 |
| CDY70097 | Canola | nucleus | 33.88 | 35.17 |
| CDX86040 | Canola | nucleus | 37.14 | 32.73 |
| CDX86041 | Canola | nucleus | 36.73 | 32.37 |
| CDX99125 | Canola | nucleus | 36.73 | 32.37 |
| CDY37512 | Canola | nucleus | 26.53 | 32.34 |
| CDY00146 | Canola | nucleus | 21.63 | 31.93 |
| CDX91944 | Canola | nucleus | 26.53 | 31.4 |
| CDY49063 | Canola | nucleus | 26.53 | 31.4 |
| CDX74303 | Canola | nucleus | 26.53 | 31.25 |
| CDX95420 | Canola | nucleus | 28.98 | 30.6 |
| CDY61190 | Canola | nucleus | 32.24 | 30.27 |
| CDX77436 | Canola | nucleus | 31.84 | 30.0 |
| CDX85285 | Canola | nucleus | 32.65 | 29.63 |
| CDY45895 | Canola | nucleus | 31.02 | 29.57 |
| CDX86354 | Canola | nucleus | 32.24 | 29.48 |
| CDY49231 | Canola | nucleus | 31.84 | 29.1 |
| CDY64694 | Canola | nucleus | 32.24 | 28.83 |
| CDX94829 | Canola | nucleus | 31.84 | 28.57 |
| CDY00083 | Canola | nucleus | 31.43 | 28.52 |
| CDX93006 | Canola | nucleus | 31.84 | 28.47 |
| CDY19978 | Canola | nucleus | 31.02 | 28.46 |
| CDY27504 | Canola | nucleus | 31.02 | 27.94 |
| CDY20036 | Canola | nucleus | 26.12 | 27.59 |
| CDX86471 | Canola | nucleus | 26.12 | 27.59 |
| CDY44433 | Canola | nucleus | 26.12 | 27.59 |
| CDX80085 | Canola | nucleus | 21.22 | 26.13 |
| CDY42115 | Canola | nucleus | 28.16 | 24.91 |
| CDX84981 | Canola | nucleus | 28.98 | 24.65 |
| CDY69488 | Canola | nucleus | 27.76 | 24.55 |
| CDY03859 | Canola | nucleus | 28.57 | 24.39 |
| CDY69953 | Canola | nucleus | 27.35 | 23.76 |
| CDY33891 | Canola | nucleus | 30.61 | 23.58 |
| CDY05611 | Canola | nucleus | 30.61 | 23.58 |
| CDY35782 | Canola | nucleus | 19.59 | 23.41 |
| CDX96033 | Canola | nucleus | 26.94 | 23.24 |
| CDY01906 | Canola | nucleus | 26.94 | 23.16 |
| CDY12705 | Canola | nucleus | 26.94 | 23.16 |
| CDY54094 | Canola | nucleus | 26.94 | 23.16 |
| CDY24688 | Canola | nucleus | 29.8 | 22.88 |
| CDY34949 | Canola | nucleus | 29.8 | 22.81 |
| CDX99864 | Canola | nucleus | 29.8 | 22.81 |
| CDY05270 | Canola | nucleus | 29.8 | 22.67 |
| CDY70282 | Canola | nucleus | 23.67 | 19.73 |
| CDX74100 | Canola | nucleus | 23.27 | 16.91 |
| CDY58600 | Canola | nucleus | 15.1 | 11.46 |
| CDX86221 | Canola | nucleus | 1.22 | 4.29 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078C9Q6 | EnsemblPlants:CDX73572 | ProteinID:CDX73572 | ProteinID:CDX73572.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00109121001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF636 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EB7460 | SEG:seg | : |
Description
BnaC08g24310D
Coordinates
chrLK031799:+:1321742..1322987
Molecular Weight (calculated)
29303.1 Da
IEP (calculated)
7.503
GRAVY (calculated)
-1.157
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYKKEETLR RGPWLEEEDE RLVKFVTLLG ERRWDSLARV SGLKRSGKSC RLRWMNYLNP SLKRGPMSQE EETIIFQLHS QWGNKWSKIA RRLPGRTDNE
101: VKNYYRTHFR KKLEAQNYDK IIDWRKNPGE ELFHKYKETE IAWTRTTTQE HGFDKPVKES KQKNMESDKE TNGGICERES FGVMNSPYEN RISDWISEIS
201: TDRSDANFLE DRTSSSSENN ININVGSWWF QETRDFEEFS CSLWS
101: VKNYYRTHFR KKLEAQNYDK IIDWRKNPGE ELFHKYKETE IAWTRTTTQE HGFDKPVKES KQKNMESDKE TNGGICERES FGVMNSPYEN RISDWISEIS
201: TDRSDANFLE DRTSSSSENN ININVGSWWF QETRDFEEFS CSLWS
001: MDFKKEETLR RGPWLEEEDE RLVKVISLLG ERRWDSLAIV SGLKRSGKSC RLRWMNYLNP TLKRGPMSQE EERIIFQLHA LWGNKWSKIA RRLPGRTDNE
101: IKNYWRTHYR KKQEAQNYGK LFEWRGNTGE ELLHKYKETE ITRTKTTSQE HGFVEVVSME SGKEANGGVG GRESFGVMKS PYENRISDWI SEISTDQSEA
201: NLSEDHSSNS CSENNINIGT WWFQETRDFE EFSCSLWS
101: IKNYWRTHYR KKQEAQNYGK LFEWRGNTGE ELLHKYKETE ITRTKTTSQE HGFVEVVSME SGKEANGGVG GRESFGVMKS PYENRISDWI SEISTDQSEA
201: NLSEDHSSNS CSENNINIGT WWFQETRDFE EFSCSLWS
Arabidopsis Description
MYB27Transcription factor MYB27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.