Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42115 | Canola | nucleus | 93.06 | 96.75 |
| CDY58599 | Canola | nucleus | 30.9 | 83.96 |
| CDY03859 | Canola | nucleus | 82.64 | 82.93 |
| GSMUA_Achr3P01370_001 | Banana | nucleus | 31.94 | 74.19 |
| AT1G25340.3 | Thale cress | nucleus | 74.65 | 69.81 |
| CDY69488 | Canola | nucleus | 59.72 | 62.09 |
| CDY69953 | Canola | nucleus | 59.72 | 60.99 |
| CDX96033 | Canola | nucleus | 58.33 | 59.15 |
| CDY12705 | Canola | nucleus | 57.64 | 58.25 |
| CDY01906 | Canola | nucleus | 57.29 | 57.89 |
| GSMUA_Achr10P... | Banana | nucleus | 34.72 | 57.14 |
| CDY54094 | Canola | nucleus | 56.25 | 56.84 |
| CDY58600 | Canola | nucleus | 60.07 | 53.56 |
| CDX85422 | Canola | nucleus | 33.33 | 52.46 |
| GSMUA_Achr1P21020_001 | Banana | nucleus | 35.07 | 51.79 |
| CDX86220 | Canola | nucleus | 33.33 | 49.74 |
| GSMUA_Achr8P18460_001 | Banana | nucleus | 38.54 | 44.58 |
| CDY37512 | Canola | nucleus | 30.9 | 44.28 |
| CDY00146 | Canola | nucleus | 25.35 | 43.98 |
| Solyc03g119370.1.1 | Tomato | nucleus | 42.71 | 43.93 |
| PGSC0003DMT400014383 | Potato | nucleus | 42.01 | 43.53 |
| CDY49063 | Canola | nucleus | 30.9 | 43.0 |
| VIT_01s0011g03730.t01 | Wine grape | nucleus | 42.71 | 42.71 |
| CDX95420 | Canola | nucleus | 34.03 | 42.24 |
| CDY44433 | Canola | nucleus | 34.03 | 42.24 |
| CDX86471 | Canola | nucleus | 34.03 | 42.24 |
| CDX91944 | Canola | nucleus | 30.21 | 42.03 |
| CDY20036 | Canola | nucleus | 33.33 | 41.38 |
| CDX74303 | Canola | nucleus | 29.86 | 41.35 |
| KRG90844 | Soybean | nucleus | 43.4 | 40.72 |
| KRH35934 | Soybean | nucleus | 42.36 | 39.61 |
| GSMUA_Achr2P22640_001 | Banana | nucleus | 39.93 | 39.38 |
| GSMUA_Achr3P21060_001 | Banana | nucleus | 40.62 | 38.61 |
| CDY27504 | Canola | nucleus | 36.46 | 38.6 |
| CDX80085 | Canola | nucleus | 25.69 | 37.19 |
| GSMUA_Achr6P09760_001 | Banana | nucleus | 38.89 | 36.36 |
| GSMUA_Achr11P... | Banana | nucleus | 39.58 | 36.19 |
| CDY70097 | Canola | nucleus | 28.47 | 34.75 |
| CDY49581 | Canola | nucleus | 28.47 | 34.6 |
| CDX80230 | Canola | nucleus | 28.47 | 34.6 |
| CDY33891 | Canola | nucleus | 37.5 | 33.96 |
| CDY05611 | Canola | nucleus | 37.5 | 33.96 |
| CDY34949 | Canola | nucleus | 37.5 | 33.75 |
| CDX99864 | Canola | nucleus | 37.5 | 33.75 |
| CDX71075 | Canola | nucleus | 28.12 | 33.61 |
| CDY24688 | Canola | nucleus | 37.15 | 33.54 |
| CDY05270 | Canola | nucleus | 37.5 | 33.54 |
| Os01t0128000-01 | Rice | nucleus | 40.62 | 33.43 |
| Zm00001d040019_P001 | Maize | nucleus | 42.01 | 33.43 |
| CDX77436 | Canola | nucleus | 29.86 | 33.08 |
| CDX88722 | Canola | nucleus | 27.78 | 33.06 |
| Zm00001d008528_P001 | Maize | nucleus | 41.32 | 32.87 |
| TraesCS3D01G036200.1 | Wheat | nucleus | 39.24 | 32.85 |
| HORVU3Hr1G004050.1 | Barley | nucleus | 39.93 | 32.76 |
| TraesCS3A01G044700.1 | Wheat | nucleus | 39.24 | 32.66 |
| TraesCS3B01G039100.1 | Wheat | nucleus | 39.58 | 32.48 |
| CDY61190 | Canola | nucleus | 29.17 | 32.18 |
| CDY49231 | Canola | nucleus | 29.51 | 31.72 |
| CDY64694 | Canola | nucleus | 29.51 | 31.02 |
| CDY70282 | Canola | nucleus | 31.6 | 30.95 |
| CDX86040 | Canola | nucleus | 29.86 | 30.94 |
| CDX86041 | Canola | nucleus | 29.86 | 30.94 |
| CDX99125 | Canola | nucleus | 29.86 | 30.94 |
| CDX93006 | Canola | nucleus | 29.17 | 30.66 |
| EES00381 | Sorghum | nucleus | 41.32 | 30.59 |
| CDX94829 | Canola | nucleus | 28.82 | 30.4 |
| CDY45895 | Canola | nucleus | 26.39 | 29.57 |
| CDX86354 | Canola | nucleus | 27.43 | 29.48 |
| CDX85285 | Canola | nucleus | 27.43 | 29.26 |
| CDY00083 | Canola | nucleus | 27.43 | 29.26 |
| CDY19978 | Canola | nucleus | 27.08 | 29.21 |
| CDX67561 | Canola | nucleus | 24.31 | 29.17 |
| CDY13311 | Canola | nucleus | 24.65 | 29.1 |
| CDX78153 | Canola | nucleus | 24.65 | 28.98 |
| CDX73572 | Canola | nucleus | 24.65 | 28.98 |
| CDX74100 | Canola | nucleus | 30.9 | 26.41 |
| CDY35782 | Canola | nucleus | 15.62 | 21.95 |
| CDX86221 | Canola | nucleus | 2.78 | 11.43 |
Protein Annotations
| EnsemblPlants:CDX84981 | EnsemblPlantsGene:GSBRNA2T00142385001 | Gene3D:1.10.10.60 | GO:A0A078D6P4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF510 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX84981 | ProteinID:CDX84981.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EC9267 | MapMan:15.5.2.1 | : | : |
Description
BnaC05g20740D
Coordinates
chrLK031839:+:1064574..1065758
Molecular Weight (calculated)
33265.1 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.854
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSRMKKRCN ENEEGVEQRK GPWTLEEDTI LTNYIAHNGE GRWNVLAKSS GLKRKGKSCR LRWLNYLKPD IKRGNLTPQE QLLILELHCQ WGNRWSKIAQ
101: YLPGRTDNEI KNYWRTRVQK QARQLNIDSS SHQFLEAVRS FWVPRLIHKM KDNSNTNTKT PHPDSLGPVD SLGPVSHDSG FNNMGCSTSM SKELTTKMSQ
201: FMDLSDLETT NSMSLKGSRG SSNQCVSEDY CSLPCLEEEY MVPTMGNSDI LPFKDCHVAD SSYEEDVTQD SMWNMDDIWQ FEEYAHFN
101: YLPGRTDNEI KNYWRTRVQK QARQLNIDSS SHQFLEAVRS FWVPRLIHKM KDNSNTNTKT PHPDSLGPVD SLGPVSHDSG FNNMGCSTSM SKELTTKMSQ
201: FMDLSDLETT NSMSLKGSRG SSNQCVSEDY CSLPCLEEEY MVPTMGNSDI LPFKDCHVAD SSYEEDVTQD SMWNMDDIWQ FEEYAHFN
001: MSNITKKKCN GNEEGAEQRK GPWTLEEDTL LTNYISHNGE GRWNLLAKSS GLKRAGKSCR LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKISK
101: YLPGRTDNDI KNYWRTRVQK QARQLNIDSN SHKFIEVVRS FWFPRLINEI KDNSYTNNIK ANAPDLLGPI LRDSKDLGFN NMDCSTSMSE DLKKTSQFMD
201: FSDLETTMSL EGSRGGSSQC VSEVYSSFPC LEEEYMVAVM GSSDISALHD CHVADSKYED DVTQDLMWNM DDIWQFNEYA HFN
101: YLPGRTDNDI KNYWRTRVQK QARQLNIDSN SHKFIEVVRS FWFPRLINEI KDNSYTNNIK ANAPDLLGPI LRDSKDLGFN NMDCSTSMSE DLKKTSQFMD
201: FSDLETTMSL EGSRGGSSQC VSEVYSSFPC LEEEYMVAVM GSSDISALHD CHVADSKYED DVTQDLMWNM DDIWQFNEYA HFN
Arabidopsis Description
MYB116myb domain protein 116 [Source:TAIR;Acc:AT1G25340]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.