Factsheet for Solyc12g099120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099130.1.1	Tomato	nucleus	89.07	93.62
PGSC0003DMT400011745	Potato	nucleus	84.62	89.32
GSMUA_Achr4P19990_001	Banana	nucleus	38.87	75.0
CDX85422	Canola	nucleus	52.23	70.49
Solyc02g086690.2.1	Tomato	nucleus	25.51	67.02
CDX86220	Canola	nucleus	52.23	66.84
GSMUA_Achr5P21090_001	Banana	nucleus	48.99	66.48
GSMUA_Achr3P12730_001	Banana	nucleus	40.08	56.57
Solyc02g067760.2.1	Tomato	nucleus	40.49	51.28
VIT_05s0077g00500.t01	Wine grape	nucleus	63.16	50.98
GSMUA_Achr11P...	Banana	nucleus	53.85	50.76
GSMUA_Achr8P10800_001	Banana	nucleus	52.23	50.39
Solyc01g057910.2.1	Tomato	nucleus	58.3	50.17
GSMUA_Achr11P...	Banana	nucleus	53.44	50.0
AT1G48000.1	Thale cress	nucleus	48.99	49.79
GSMUA_Achr9P16640_001	Banana	nucleus	51.42	48.85
CDY33891	Canola	nucleus	62.75	48.74
CDY05611	Canola	nucleus	62.75	48.74
Bra020624.1-P	Field mustard	nucleus	62.75	48.74
Bra001202.1-P	Field mustard	nucleus	59.51	48.36
Solyc09g008390.1.1	Tomato	nucleus	25.51	48.09
GSMUA_AchrUn_...	Banana	nucleus	51.42	47.57
Solyc12g099140.1.1	Tomato	nucleus	57.09	47.0
GSMUA_Achr8P29910_001	Banana	nucleus	51.01	46.84
CDY24688	Canola	nucleus	60.32	46.71
GSMUA_AchrUn_...	Banana	nucleus	53.04	46.62
CDY05270	Canola	nucleus	60.73	46.58
GSMUA_Achr1P24960_001	Banana	nucleus	50.61	46.3
Bra040274.1-P	Field mustard	nucleus	59.92	46.25
CDY34949	Canola	nucleus	59.92	46.25
CDX99864	Canola	nucleus	59.92	46.25
Bra029582.1-P	Field mustard	nucleus	59.92	45.96
Bra010021.1-P	Field mustard	nucleus	59.92	45.82
Bra010022.1-P	Field mustard	nucleus	59.92	45.82
KRH02414	Soybean	nucleus	59.11	45.34
Solyc05g053330.2.1	Tomato	nucleus	57.49	44.65
KRH50671	Soybean	nucleus	58.3	44.31
TraesCS5B01G093000.1	Wheat	nucleus	49.39	43.88
TraesCS4A01G172200.1	Wheat	nucleus	50.61	43.25
TraesCS5D01G099100.1	Wheat	nucleus	48.58	43.17
HORVU4Hr1G028780.1	Barley	nucleus	51.01	43.0
HORVU5Hr1G022690.1	Barley	nucleus	48.99	42.91
TraesCSU01G069000.1	Wheat	nucleus	50.2	42.76
TraesCS4D01G142900.1	Wheat	nucleus	50.61	42.66
GSMUA_AchrUn_...	Banana	nucleus	47.37	42.55
TraesCS5A01G087100.1	Wheat	nucleus	47.77	42.45
KRH36928	Soybean	nucleus	58.3	42.35
CDY70282	Canola	nucleus	49.8	41.84
KRG97314	Soybean	nucleus	57.49	41.64
Solyc05g009230.1.1	Tomato	nucleus	44.94	40.51
TraesCS4B01G179500.1	Wheat	nucleus	51.82	40.25
TraesCS4A01G124900.1	Wheat	nucleus	51.82	40.13
TraesCS4D01G181100.1	Wheat	nucleus	51.82	40.13
GSMUA_Achr7P05570_001	Banana	nucleus	43.72	39.71
EES00624	Sorghum	nucleus	48.99	39.54
TraesCS3D01G014800.1	Wheat	nucleus	44.13	39.21
Zm00001d040594_P001	Maize	nucleus	47.77	38.94
TraesCS3D01G413700.1	Wheat	nucleus	46.15	38.91
Solyc03g119370.1.1	Tomato	nucleus	43.32	38.21
KXG39500	Sorghum	nucleus	51.42	37.8
GSMUA_Achr11P...	Banana	nucleus	52.63	37.79
TraesCS1D01G078600.1	Wheat	nucleus	49.39	37.77
HORVU1Hr1G016420.1	Barley	nucleus	49.39	37.54
Zm00001d028930_P001	Maize	nucleus	51.01	37.5
TraesCS3B01G453300.1	Wheat	nucleus	46.56	37.46
TraesCS1A01G076200.1	Wheat	nucleus	48.99	37.35
TraesCS3A01G418100.1	Wheat	nucleus	46.56	37.34
TraesCS1B01G094500.1	Wheat	nucleus	48.99	37.12
GSMUA_Achr3P08370_001	Banana	nucleus	42.11	36.24
Zm00001d009066_P001	Maize	nucleus	46.56	36.16
KXG36991	Sorghum	nucleus	49.39	35.67
TraesCS2A01G097200.1	Wheat	nucleus	46.96	35.58
Zm00001d047579_P001	Maize	nucleus	50.2	35.53
TraesCS2D01G096000.1	Wheat	nucleus	46.56	35.06
TraesCS2B01G112600.1	Wheat	nucleus	46.96	34.94
Solyc05g053150.1.1	Tomato	nucleus	32.39	34.93
EES17207	Sorghum	nucleus	47.37	34.72
HORVU4Hr1G052490.5	Barley	nucleus, plastid	51.82	34.69
Zm00001d007191_P001	Maize	nucleus	48.58	34.58
CDX74100	Canola	nucleus	46.56	34.12
Solyc11g073120.1.1	Tomato	nucleus	29.96	34.1
Zm00001d048647_P001	Maize	nucleus	48.58	34.09
Zm00001d030644_P001	Maize	nucleus	47.77	33.62
Solyc10g083900.1.1	Tomato	nucleus	27.13	33.5
HORVU3Hr1G092820.1	Barley	nucleus	44.53	33.23
EES10257	Sorghum	nucleus	48.18	32.6
Zm00001d010933_P001	Maize	nucleus	48.18	32.43
Zm00001d024726_P001	Maize	nucleus	46.56	32.39
Solyc02g089190.1.1	Tomato	nucleus	30.36	31.38
HORVU2Hr1G016380.1	Barley	nucleus	45.75	31.13
Solyc09g090790.2.1	Tomato	nucleus	31.58	31.08
Solyc06g005330.2.1	Tomato	nucleus	28.34	29.66
KXG21220	Sorghum	nucleus	48.18	29.31
Zm00001d024725_P001	Maize	nucleus	48.18	29.31
Os05t0132700-01	Rice	nucleus	25.51	29.3
KXG21221	Sorghum	nucleus	48.58	25.16
CDY58600	Canola	nucleus	27.13	20.74

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4DHT3	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF494
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc12g099120.1	EnsemblPlants:Solyc12g099120.1.1	UniParc:UPI000276A536
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:66391554..66392661

Molecular Weight (calculated)

29432.4 Da

IEP (calculated)

6.167

GRAVY (calculated)

-0.905

Length

247 amino acids

Sequence
(BLAST)

001: MDKLINQENN IDKEIMELRR GPWTVEEDLV LMNYISHHGE GRWNSLSRCA GLKRTGKSCR LRWLNYLRPD VRHGNITLEE QLLILQLHSR WGNRWSKIAQ
101: HLPGRTDNEI KNYWRTRVQK HAKQLKCDVN SKQFQDTLRY LWIPRLVERI EASKISNYNC INEAQQSIMR TDINNNFSTS VTLENSSVAT SSENSNQDYN
201: QVNQSDQLWY EDYQAMEQQN NIELWMDNED VFNNLCNNED IWSLLEH

Best Arabidopsis Sequence Match ( AT5G49620.1 )
(BLAST)

001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF

Arabidopsis Description

AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.