Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G172200.1 | Wheat | nucleus | 95.9 | 97.23 |
| TraesCSU01G069000.1 | Wheat | nucleus | 95.56 | 96.55 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 91.13 | 91.13 |
| Os11t0684000-01 | Rice | nucleus | 67.24 | 69.12 |
| CDX85422 | Canola | nucleus | 40.27 | 64.48 |
| CDX86220 | Canola | nucleus | 40.27 | 61.14 |
| TraesCS5D01G099100.1 | Wheat | nucleus | 55.97 | 58.99 |
| PGSC0003DMT400011745 | Potato | nucleus | 41.98 | 52.56 |
| PGSC0003DMT400011750 | Potato | nucleus | 40.96 | 52.17 |
| Solyc12g099130.1.1 | Tomato | nucleus | 41.3 | 51.49 |
| Solyc12g099120.1.1 | Tomato | nucleus | 42.66 | 50.61 |
| Zm00001d048647_P001 | Maize | nucleus | 60.41 | 50.28 |
| EES10257 | Sorghum | nucleus | 61.43 | 49.32 |
| Solyc01g057910.2.1 | Tomato | nucleus | 47.1 | 48.08 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 50.17 | 48.04 |
| AT1G48000.1 | Thale cress | nucleus | 39.59 | 47.74 |
| PGSC0003DMT400022600 | Potato | nucleus | 47.44 | 46.8 |
| TraesCS3D01G413700.1 | Wheat | nucleus | 44.71 | 44.71 |
| KRH02414 | Soybean | nucleus | 48.46 | 44.1 |
| KRH50671 | Soybean | nucleus | 48.46 | 43.69 |
| TraesCS4D01G181100.1 | Wheat | nucleus | 47.44 | 43.57 |
| Solyc05g053330.2.1 | Tomato | nucleus | 46.76 | 43.08 |
| PGSC0003DMT400011748 | Potato | nucleus | 43.34 | 43.05 |
| Bra020624.1-P | Field mustard | nucleus | 46.42 | 42.77 |
| CDY33891 | Canola | nucleus | 46.42 | 42.77 |
| CDY05611 | Canola | nucleus | 46.42 | 42.77 |
| PGSC0003DMT400069841 | Potato | nucleus | 46.76 | 42.28 |
| KRG97314 | Soybean | nucleus | 49.15 | 42.23 |
| TraesCS1D01G415000.1 | Wheat | nucleus | 32.76 | 42.11 |
| Bra001202.1-P | Field mustard | nucleus | 43.69 | 42.11 |
| KRH36928 | Soybean | nucleus | 48.81 | 42.06 |
| CDY24688 | Canola | nucleus | 45.05 | 41.38 |
| AT5G49620.2 | Thale cress | nucleus | 45.05 | 41.12 |
| Bra029582.1-P | Field mustard | nucleus | 45.05 | 40.99 |
| CDY05270 | Canola | nucleus | 45.05 | 40.99 |
| CDX99864 | Canola | nucleus | 44.37 | 40.62 |
| Bra040274.1-P | Field mustard | nucleus | 44.37 | 40.62 |
| CDY34949 | Canola | nucleus | 44.37 | 40.62 |
| Solyc12g099140.1.1 | Tomato | nucleus | 41.3 | 40.33 |
| Bra010021.1-P | Field mustard | nucleus | 44.03 | 39.94 |
| Bra010022.1-P | Field mustard | nucleus | 44.03 | 39.94 |
| AT3G06490.1 | Thale cress | nucleus | 44.03 | 39.94 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 37.2 | 39.21 |
| TraesCS2D01G096000.1 | Wheat | nucleus | 43.69 | 39.02 |
| TraesCS3D01G223700.1 | Wheat | nucleus | 28.33 | 38.78 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 42.32 | 38.39 |
| CDY70282 | Canola | nucleus | 36.52 | 36.39 |
| TraesCS3D01G036200.1 | Wheat | nucleus | 39.25 | 33.43 |
| TraesCS5D01G095600.1 | Wheat | nucleus | 25.6 | 31.65 |
| TraesCS4D01G339100.1 | Wheat | nucleus | 25.94 | 30.77 |
| TraesCS2D01G361600.1 | Wheat | nucleus | 26.96 | 30.74 |
| TraesCS1D01G043300.1 | Wheat | nucleus | 26.28 | 30.32 |
| TraesCS4D01G142300.1 | Wheat | nucleus | 24.57 | 30.25 |
| TraesCS3D01G540600.1 | Wheat | nucleus | 26.28 | 30.08 |
| CDX74100 | Canola | nucleus | 33.79 | 29.38 |
| TraesCS6D01G207300.1 | Wheat | nucleus | 26.96 | 28.73 |
| CDY58600 | Canola | nucleus | 21.84 | 19.81 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G142900.1 | EnsemblPlantsGene:TraesCS4D01G142900 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF548 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:129776374..129777655
Molecular Weight (calculated)
32656.9 Da
IEP (calculated)
5.790
GRAVY (calculated)
-0.625
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVVLQSRSS NSMAAEPEEE AELRRGPWTV DEDLTLINYI ADHGEGRWNA LARAAGLRRT GKSCRLRWLN YLRPDVKRGN FTADEQLLIL DLHSRWGNRW
101: SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL NCDVGSATFK DAMRYLWMPR LVERIHATAA PTGGDPTIGD TSCASGVTSM ATTAATATTY PENNSPSSAV
201: TTSRSASSGS FTSELCGEEK NLHVHGSGEK TTSGGDWMQD ADQEFWAMHM QIQPDEGGLF HVDHELSGWV QGFSDVGVSA DNLWSLEDIW KMQ
101: SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL NCDVGSATFK DAMRYLWMPR LVERIHATAA PTGGDPTIGD TSCASGVTSM ATTAATATTY PENNSPSSAV
201: TTSRSASSGS FTSELCGEEK NLHVHGSGEK TTSGGDWMQD ADQEFWAMHM QIQPDEGGLF HVDHELSGWV QGFSDVGVSA DNLWSLEDIW KMQ
001: MEDYERINSN SPTHEEDSDV RKGPWTEEED AILVNFVSIH GDARWNHIAR SSGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQFMILKLH SLWGNRWSKI
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
Arabidopsis Description
ATMYB2ATMYB2 [Source:UniProtKB/TrEMBL;Acc:Q39028]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.