Factsheet for TraesCS4D01G181100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G179500.1	Wheat	nucleus	97.18	97.48
TraesCS4A01G124900.1	Wheat	nucleus	97.18	97.18
Os03t0315400-01	Rice	nucleus	80.88	78.42
HORVU4Hr1G052490.5	Barley	nucleus, plastid	90.28	78.05
KXG39500	Sorghum	nucleus	79.0	75.0
Zm00001d028930_P001	Maize	nucleus	76.18	72.32
CDX85422	Canola	nucleus	41.07	71.58
Zm00001d047579_P001	Maize	nucleus	76.18	69.63
CDX86220	Canola	nucleus	41.07	67.88
PGSC0003DMT400011745	Potato	nucleus	39.81	54.27
Solyc12g099130.1.1	Tomato	nucleus	39.81	54.04
PGSC0003DMT400011750	Potato	nucleus	38.87	53.91
GSMUA_Achr1P24960_001	Banana	nucleus	45.45	53.7
AT1G48000.1	Thale cress	nucleus	40.44	53.09
Solyc12g099120.1.1	Tomato	nucleus	40.13	51.82
VIT_05s0077g00500.t01	Wine grape	nucleus	49.53	51.63
TraesCS2D01G096000.1	Wheat	nucleus	52.35	50.91
Solyc01g057910.2.1	Tomato	nucleus	44.2	49.13
PGSC0003DMT400022600	Potato	nucleus	45.14	48.48
TraesCS5D01G099100.1	Wheat	nucleus	41.69	47.84
Bra001202.1-P	Field mustard	nucleus	45.45	47.7
TraesCS4D01G142900.1	Wheat	nucleus	43.57	47.44
TraesCS3D01G413700.1	Wheat	nucleus	43.26	47.1
KRH02414	Soybean	nucleus	46.71	46.27
PGSC0003DMT400011748	Potato	nucleus	42.63	46.1
CDY33891	Canola	nucleus	45.77	45.91
Bra020624.1-P	Field mustard	nucleus	45.77	45.91
Solyc05g053330.2.1	Tomato	nucleus	45.77	45.91
CDY05611	Canola	nucleus	45.77	45.91
KRH50671	Soybean	nucleus	46.71	45.85
CDY24688	Canola	nucleus	45.77	45.77
CDY05270	Canola	nucleus	45.77	45.34
Bra029582.1-P	Field mustard	nucleus	45.45	45.03
CDY34949	Canola	nucleus	45.14	45.0
Bra040274.1-P	Field mustard	nucleus	45.14	45.0
CDX99864	Canola	nucleus	45.14	45.0
AT3G06490.1	Thale cress	nucleus	45.45	44.89
Bra010021.1-P	Field mustard	nucleus	45.45	44.89
Bra010022.1-P	Field mustard	nucleus	45.45	44.89
KRH36928	Soybean	nucleus	47.65	44.71
Solyc12g099140.1.1	Tomato	nucleus	42.01	44.67
AT5G49620.2	Thale cress	nucleus	44.51	44.24
KRG97314	Soybean	nucleus	47.02	43.99
TraesCS3D01G223700.1	Wheat	nucleus	29.47	43.93
PGSC0003DMT400069841	Potato	nucleus	44.51	43.83
TraesCS1D01G415000.1	Wheat	nucleus	30.72	42.98
TraesCS1D01G078600.1	Wheat	nucleus	42.95	42.41
TraesCS3D01G014800.1	Wheat	nucleus	36.68	42.09
CDY70282	Canola	nucleus	36.99	40.14
TraesCS3D01G036200.1	Wheat	nucleus	37.3	34.59
TraesCS5D01G095600.1	Wheat	nucleus	24.76	33.33
CDX74100	Canola	nucleus	35.11	33.23
TraesCS4D01G142300.1	Wheat	nucleus	24.45	32.77
TraesCS1D01G043300.1	Wheat	nucleus	25.71	32.28
TraesCS2D01G361600.1	Wheat	nucleus	25.39	31.52
TraesCS6D01G207300.1	Wheat	nucleus	26.65	30.91
TraesCS3D01G540600.1	Wheat	nucleus	24.76	30.86
TraesCS4D01G339100.1	Wheat	nucleus	23.51	30.36
CDY58600	Canola	nucleus	21.94	21.67

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009628	GO:GO:0009987
GO:GO:0045893	GO:GO:1901002	GO:GO:1902584	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF743	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS4D01G181100	EnsemblPlants:TraesCS4D01G181100.1	TIGR:cd00167	SEG:seg	:

Description

No Description!

Coordinates

chr4D:+:315596668..315598126

Molecular Weight (calculated)

35303.0 Da

IEP (calculated)

4.516

GRAVY (calculated)

-0.455

Length

319 amino acids

Sequence
(BLAST)

001: MDMVHERDSS SEEEVMAGDL RRGPWTVEED ILLVNYIAAH GEGRWNSLAR SAGLKRTGKS CRLRWLNYLR PDLRRGSITP QEQLLILELH SRWGNRWSKI
101: AQHLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSQQFKDVM RYLWMPRLVE RIQAAATADA VQTAADTPLS WQHGADDALY ESPELPVDAC WPAEYAAVAG
201: GQLPDASVAE LSSTTTAGSS SPSTTDSGAG AQPSWPAAVD GAEWFTTACD ASSAAATMCD TDQLIQQQAP SQLAGTWTSE PLPSLGFPEL GVADFEIGSF
301: DVDSIWSMDD LWYTQPQFV

Best Arabidopsis Sequence Match ( AT5G49620.1 )
(BLAST)

001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF

Arabidopsis Description

AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.