Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G097200.1 | Wheat | nucleus | 96.04 | 96.63 |
| TraesCS2B01G112600.1 | Wheat | nucleus | 96.65 | 95.48 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 81.1 | 73.28 |
| CDX85422 | Canola | nucleus | 34.15 | 61.2 |
| CDX86220 | Canola | nucleus | 34.15 | 58.03 |
| TraesCS4D01G181100.1 | Wheat | nucleus | 50.91 | 52.35 |
| Os07t0688200-01 | Rice | nucleus | 46.65 | 51.0 |
| PGSC0003DMT400011745 | Potato | nucleus | 35.37 | 49.57 |
| PGSC0003DMT400011750 | Potato | nucleus | 34.45 | 49.13 |
| Solyc12g099130.1.1 | Tomato | nucleus | 34.76 | 48.51 |
| Solyc12g099120.1.1 | Tomato | nucleus | 35.06 | 46.56 |
| AT1G48000.1 | Thale cress | nucleus | 32.93 | 44.44 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 39.02 | 43.69 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 39.02 | 41.83 |
| Solyc01g057910.2.1 | Tomato | nucleus | 36.59 | 41.81 |
| TraesCS5D01G099100.1 | Wheat | nucleus | 35.06 | 41.37 |
| PGSC0003DMT400022600 | Potato | nucleus | 36.89 | 40.74 |
| TraesCS1D01G415000.1 | Wheat | nucleus | 28.05 | 40.35 |
| TraesCS3D01G413700.1 | Wheat | nucleus | 35.98 | 40.27 |
| KXG36991 | Sorghum | nucleus | 41.16 | 39.47 |
| PGSC0003DMT400011748 | Potato | nucleus | 35.37 | 39.32 |
| Solyc05g053330.2.1 | Tomato | nucleus | 37.8 | 38.99 |
| KRH02414 | Soybean | nucleus | 38.11 | 38.82 |
| Solyc12g099140.1.1 | Tomato | nucleus | 35.37 | 38.67 |
| Bra001202.1-P | Field mustard | nucleus | 35.37 | 38.16 |
| CDY05611 | Canola | nucleus | 36.89 | 38.05 |
| Zm00001d007191_P001 | Maize | nucleus | 40.24 | 38.04 |
| PGSC0003DMT400069841 | Potato | nucleus | 37.5 | 37.96 |
| TraesCS3D01G223700.1 | Wheat | nucleus | 24.7 | 37.85 |
| Bra020624.1-P | Field mustard | nucleus | 36.59 | 37.74 |
| CDY33891 | Canola | nucleus | 36.59 | 37.74 |
| KRH36928 | Soybean | nucleus | 38.72 | 37.35 |
| Bra010022.1-P | Field mustard | nucleus | 36.59 | 37.15 |
| Bra010021.1-P | Field mustard | nucleus | 36.59 | 37.15 |
| KRH50671 | Soybean | nucleus | 36.59 | 36.92 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 31.1 | 36.69 |
| CDY24688 | Canola | nucleus | 35.67 | 36.68 |
| KRG97314 | Soybean | nucleus | 38.11 | 36.66 |
| AT5G49620.2 | Thale cress | nucleus | 35.67 | 36.45 |
| CDY05270 | Canola | nucleus | 35.67 | 36.34 |
| CDY34949 | Canola | nucleus | 35.37 | 36.25 |
| CDX99864 | Canola | nucleus | 35.37 | 36.25 |
| Bra040274.1-P | Field mustard | nucleus | 35.37 | 36.25 |
| AT3G06490.1 | Thale cress | nucleus | 35.67 | 36.22 |
| Bra029582.1-P | Field mustard | nucleus | 35.37 | 36.02 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 35.06 | 35.6 |
| CDY70282 | Canola | nucleus | 29.57 | 32.99 |
| TraesCS3D01G036200.1 | Wheat | nucleus | 34.15 | 32.56 |
| TraesCS5D01G095600.1 | Wheat | nucleus | 22.87 | 31.65 |
| TraesCS2D01G361600.1 | Wheat | nucleus | 23.17 | 29.57 |
| TraesCS4D01G142300.1 | Wheat | nucleus | 21.04 | 28.99 |
| TraesCS4D01G339100.1 | Wheat | nucleus | 21.65 | 28.74 |
| TraesCS1D01G043300.1 | Wheat | nucleus | 22.26 | 28.74 |
| TraesCS6D01G207300.1 | Wheat | nucleus | 24.09 | 28.73 |
| TraesCS3D01G540600.1 | Wheat | nucleus | 22.26 | 28.52 |
| CDX74100 | Canola | nucleus | 27.74 | 27.0 |
| CDY58600 | Canola | nucleus | 18.29 | 18.58 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G096000.1 | EnsemblPlantsGene:TraesCS2D01G096000 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF743 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:48133084..48134070
Molecular Weight (calculated)
35984.4 Da
IEP (calculated)
5.793
GRAVY (calculated)
-0.417
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MACDQRGMRG EAAAAGEEEM LRRGPWTVEE DVLLANYIAA NGEGRWNALA RRAGLKRTGK SCRLRWLNYL RPDLRRGGMT AEEQLLVLEL HARWGNRWSK
101: IAQHLPGRTD NEIKNYWRTR VQRHAKQLRC DVGSQRFRDL VRGLWIPRLL ERIHAANNNS GDGDVIAQAT AAALPVAADG RGWPVDDVFD LGPSAVADVE
201: LSCTTALSSS SSVSTDGCGV QPLPPPAPMV ATAESAHGSV ISSAAMHDTA LWQPPQTHGG LMMTQEQQHH QQAESQPQLL GAETWWSDQT SLHAGLYADV
301: GFPELEFGGE TMWGACADDL WCTDMLGL
101: IAQHLPGRTD NEIKNYWRTR VQRHAKQLRC DVGSQRFRDL VRGLWIPRLL ERIHAANNNS GDGDVIAQAT AAALPVAADG RGWPVDDVFD LGPSAVADVE
201: LSCTTALSSS SSVSTDGCGV QPLPPPAPMV ATAESAHGSV ISSAAMHDTA LWQPPQTHGG LMMTQEQQHH QQAESQPQLL GAETWWSDQT SLHAGLYADV
301: GFPELEFGGE TMWGACADDL WCTDMLGL
001: MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
Arabidopsis Description
MYB112MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q94CJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.