Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G099100.1 | Wheat | nucleus | 96.4 | 96.4 |
| TraesCS5B01G093000.1 | Wheat | nucleus | 94.6 | 94.6 |
| HORVU5Hr1G022690.1 | Barley | nucleus | 94.6 | 93.26 |
| CDX85422 | Canola | nucleus | 39.93 | 60.66 |
| Os11t0684000-01 | Rice | nucleus | 59.71 | 58.25 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 60.07 | 57.79 |
| CDX86220 | Canola | nucleus | 39.93 | 57.51 |
| Zm00001d030644_P001 | Maize | nucleus | 64.39 | 51.0 |
| EES17207 | Sorghum | nucleus | 61.15 | 50.45 |
| PGSC0003DMT400011745 | Potato | nucleus | 41.73 | 49.57 |
| Solyc12g099130.1.1 | Tomato | nucleus | 41.37 | 48.94 |
| PGSC0003DMT400011750 | Potato | nucleus | 40.29 | 48.7 |
| Solyc12g099120.1.1 | Tomato | nucleus | 42.45 | 47.77 |
| AT1G48000.1 | Thale cress | nucleus | 41.73 | 47.74 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 49.64 | 45.1 |
| Solyc01g057910.2.1 | Tomato | nucleus | 45.68 | 44.25 |
| PGSC0003DMT400022600 | Potato | nucleus | 45.68 | 42.76 |
| Solyc05g053330.2.1 | Tomato | nucleus | 48.56 | 42.45 |
| PGSC0003DMT400069841 | Potato | nucleus | 48.56 | 41.67 |
| TraesCS4A01G124900.1 | Wheat | nucleus | 47.48 | 41.38 |
| KRH02414 | Soybean | nucleus | 47.48 | 40.99 |
| Bra001202.1-P | Field mustard | nucleus | 44.24 | 40.46 |
| PGSC0003DMT400011748 | Potato | nucleus | 42.45 | 40.0 |
| TraesCS3A01G229500.1 | Wheat | nucleus | 30.22 | 40.0 |
| KRH50671 | Soybean | nucleus | 46.4 | 39.69 |
| AT5G49620.2 | Thale cress | nucleus | 45.68 | 39.56 |
| CDY33891 | Canola | nucleus | 44.6 | 38.99 |
| CDY05611 | Canola | nucleus | 44.6 | 38.99 |
| Bra020624.1-P | Field mustard | nucleus | 44.6 | 38.99 |
| KRG97314 | Soybean | nucleus | 47.48 | 38.71 |
| Bra010022.1-P | Field mustard | nucleus | 44.96 | 38.7 |
| Bra010021.1-P | Field mustard | nucleus | 44.96 | 38.7 |
| KRH36928 | Soybean | nucleus | 47.12 | 38.53 |
| CDY24688 | Canola | nucleus | 43.88 | 38.24 |
| Solyc12g099140.1.1 | Tomato | nucleus | 41.01 | 38.0 |
| CDY05270 | Canola | nucleus | 43.88 | 37.89 |
| Bra029582.1-P | Field mustard | nucleus | 43.88 | 37.89 |
| TraesCS1A01G406600.1 | Wheat | mitochondrion | 33.81 | 37.75 |
| CDX99864 | Canola | nucleus | 43.17 | 37.5 |
| CDY34949 | Canola | nucleus | 43.17 | 37.5 |
| Bra040274.1-P | Field mustard | nucleus | 43.17 | 37.5 |
| AT3G06490.1 | Thale cress | nucleus | 43.17 | 37.15 |
| TraesCS1A01G076200.1 | Wheat | nucleus | 43.17 | 37.04 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 41.01 | 37.01 |
| TraesCS2A01G097200.1 | Wheat | nucleus | 42.09 | 35.89 |
| CDY70282 | Canola | nucleus | 37.05 | 35.03 |
| TraesCS3A01G044700.1 | Wheat | nucleus | 40.65 | 32.66 |
| TraesCS5A01G083100.1 | Wheat | nucleus | 26.98 | 31.65 |
| TraesCS4A01G173300.2 | Wheat | nucleus | 26.98 | 31.51 |
| TraesCS2A01G363800.1 | Wheat | nucleus | 28.42 | 30.38 |
| TraesCS6A01G227700.1 | Wheat | nucleus | 29.5 | 29.93 |
| TraesCS1A01G042700.1 | Wheat | nucleus | 28.06 | 29.66 |
| TraesCS5A01G512700.1 | Wheat | nucleus | 25.9 | 29.03 |
| CDX74100 | Canola | nucleus | 34.53 | 28.49 |
| TraesCS3A01G535100.1 | Wheat | nucleus | 26.62 | 28.46 |
| CDY58600 | Canola | nucleus | 22.66 | 19.5 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G087100.1 | EnsemblPlantsGene:TraesCS5A01G087100 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF548 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:116033249..116034883
Molecular Weight (calculated)
31727.7 Da
IEP (calculated)
5.566
GRAVY (calculated)
-0.769
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MASWSSSSTQ RSSGATMPCS VVKLDDDLLH HEEETAEEIR RGPWTVEEDL TLVNYIADHG DDRWNSLARA AGLKRTGKSC RLRWLNYLRP DVKRGNFTAD
101: EQLLILDLHS RWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ KHAKQLNCDA NSTKFKDAMK YLWMPRLADH HLQQASTVGD HLVPGPPTAY MESSGMVTSS
201: SDSFASESYD GARCANASVG EMIHSGDWVQ EQNQGFWPET NQNFQLQDSE LSGWVQGFSE SDSLAENFWS LEDIWKMQ
101: EQLLILDLHS RWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ KHAKQLNCDA NSTKFKDAMK YLWMPRLADH HLQQASTVGD HLVPGPPTAY MESSGMVTSS
201: SDSFASESYD GARCANASVG EMIHSGDWVQ EQNQGFWPET NQNFQLQDSE LSGWVQGFSE SDSLAENFWS LEDIWKMQ
001: MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
Arabidopsis Description
MYB112MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q94CJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.