Factsheet for GSMUA_Achr3P12730_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P19990_001	Banana	nucleus	52.57	71.88
GSMUA_Achr3P01370_001	Banana	nucleus	49.14	69.35
GSMUA_Achr5P21090_001	Banana	nucleus	53.71	51.65
CDX85422	Canola	nucleus	53.71	51.37
GSMUA_Achr10P...	Banana	nucleus	49.71	49.71
CDX86220	Canola	nucleus	53.71	48.7
GSMUA_Achr1P27270_001	Banana	nucleus	49.14	43.88
GSMUA_Achr6P27290_001	Banana	nucleus	48.0	43.08
GSMUA_Achr1P21020_001	Banana	nucleus	47.43	42.56
PGSC0003DMT400011745	Potato	nucleus	55.43	41.45
Solyc12g099120.1.1	Tomato	nucleus	56.57	40.08
PGSC0003DMT400011750	Potato	nucleus	52.57	40.0
GSMUA_Achr11P...	Banana	nucleus	60.0	39.77
GSMUA_Achr11P...	Banana	nucleus	59.43	39.69
Solyc12g099130.1.1	Tomato	nucleus	53.14	39.57
GSMUA_Achr8P10800_001	Banana	nucleus	57.71	39.45
GSMUA_Achr9P16640_001	Banana	nucleus	57.71	38.85
GSMUA_Achr7P05570_001	Banana	nucleus	60.0	38.6
Solyc01g057910.2.1	Tomato	nucleus	61.71	37.63
GSMUA_Achr1P24960_001	Banana	nucleus	57.71	37.41
AT1G48000.1	Thale cress	nucleus	51.43	37.04
GSMUA_AchrUn_...	Banana	nucleus	56.0	36.7
GSMUA_Achr8P29910_001	Banana	nucleus	56.0	36.43
PGSC0003DMT400022600	Potato	nucleus	61.14	36.03
GSMUA_AchrUn_...	Banana	nucleus	56.57	36.0
VIT_05s0077g00500.t01	Wine grape	nucleus	62.86	35.95
GSMUA_AchrUn_...	Banana	nucleus	57.71	35.94
GSMUA_Achr8P18460_001	Banana	nucleus	50.86	35.74
GSMUA_Achr2P16200_001	Banana	nucleus	39.43	33.66
PGSC0003DMT400011748	Potato	nucleus	56.57	33.56
GSMUA_Achr4P29230_001	Banana	nucleus	38.86	33.33
KRH50671	Soybean	nucleus	61.71	33.23
Solyc12g099140.1.1	Tomato	nucleus	56.57	33.0
KRH02414	Soybean	nucleus	60.57	32.92
GSMUA_Achr11P...	Banana	nucleus	40.0	32.86
GSMUA_Achr3P08370_001	Banana	nucleus	53.71	32.75
GSMUA_Achr10P...	Banana	nucleus	38.86	32.08
PGSC0003DMT400069841	Potato	nucleus	58.86	31.79
AT5G49620.2	Thale cress	nucleus	58.29	31.78
GSMUA_Achr9P28370_001	Banana	nucleus	38.86	31.78
CDY05611	Canola	nucleus	57.71	31.76
Solyc05g053330.2.1	Tomato	nucleus	57.71	31.76
Bra020624.1-P	Field mustard	nucleus	57.71	31.76
CDY33891	Canola	nucleus	57.71	31.76
Bra001202.1-P	Field mustard	nucleus	54.86	31.58
GSMUA_Achr6P15370_001	Banana	nucleus	37.71	31.58
KRH36928	Soybean	nucleus	61.14	31.47
KRG97314	Soybean	nucleus	61.14	31.38
GSMUA_Achr11P...	Banana	nucleus	40.57	30.87
GSMUA_Achr8P12710_001	Banana	nucleus	40.57	30.74
Bra010022.1-P	Field mustard	nucleus	56.57	30.65
Bra010021.1-P	Field mustard	nucleus	56.57	30.65
GSMUA_Achr2P22640_001	Banana	nucleus	50.86	30.48
CDY24688	Canola	nucleus	55.43	30.41
CDX99864	Canola	nucleus	55.43	30.31
CDY34949	Canola	nucleus	55.43	30.31
Bra040274.1-P	Field mustard	nucleus	55.43	30.31
CDY05270	Canola	nucleus	55.43	30.12
Bra029582.1-P	Field mustard	nucleus	55.43	30.12
GSMUA_Achr1P03450_001	Banana	nucleus	41.71	30.04
GSMUA_Achr5P28350_001	Banana	nucleus	40.57	29.96
AT3G06490.1	Thale cress	nucleus	54.86	29.72
GSMUA_Achr3P21060_001	Banana	nucleus	51.43	29.7
GSMUA_Achr11P...	Banana	nucleus	57.71	29.36
GSMUA_Achr8P02640_001	Banana	nucleus	39.43	29.24
GSMUA_Achr11P...	Banana	nucleus	52.57	29.21
GSMUA_Achr10P...	Banana	nucleus	37.71	29.2
GSMUA_Achr10P...	Banana	nucleus	38.86	28.81
GSMUA_Achr7P18200_001	Banana	nucleus	39.43	28.63
GSMUA_Achr11P...	Banana	nucleus	39.43	28.63
GSMUA_Achr6P09760_001	Banana	nucleus	49.71	28.25
GSMUA_Achr8P34340_001	Banana	nucleus	36.57	26.12
CDY70282	Canola	nucleus	43.43	25.85
CDX74100	Canola	nucleus	39.43	20.47
CDY58600	Canola	nucleus	28.0	15.17
GSMUA_Achr9P07000_001	Banana	nucleus	54.86	7.64

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr3G12730_001	EnsemblPlants:GSMUA_Achr3P12730_001	EnsemblPlants:GSMUA_Achr3T12730_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0SE40
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF510	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00029676B6	:	:	:

Description

Myb-related protein 305 [Source:GMGC_GENE;Acc:GSMUA_Achr3G12730_001]

Coordinates

chr3:-:9430861..9433546

Molecular Weight (calculated)

20304.6 Da

IEP (calculated)

10.700

GRAVY (calculated)

-0.465

Length

175 amino acids

Sequence
(BLAST)

001: MEEIRRGPWT TEEDLVLIKY VAQHGEGRWN ALARCAGLKR TGKSCRLRWL NYLRPDVRRG NITPEEQLLI LDLHSRWGNR WSKIAQCLPG RTDNEIKNYW
101: RTRIITRLVE KCRQEAVHRP CCFPSRRVGL SRSLSDVSTQ LSILEVFAGR QRAVGVESLL VRSPGRTTAY SIYVL

Best Arabidopsis Sequence Match ( AT1G48000.1 )
(BLAST)

001: MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ

Arabidopsis Description

MYB112MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q94CJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.