Factsheet for Os04t0508500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62917	Soybean	nucleus	27.76	75.0
KRH33348	Soybean	nucleus	26.69	73.53
KRH55348	Soybean	nucleus	31.67	71.77
KRH11843	Soybean	nucleus	31.32	70.97
KRH75688	Soybean	nucleus	26.33	68.52
KXG26684	Sorghum	nucleus	67.97	67.73
TraesCS2B01G381800.1	Wheat	nucleus	61.21	66.67
HORVU0Hr1G005100.1	Barley	nucleus	53.38	66.67
HORVU2Hr1G087990.1	Barley	nucleus	61.21	66.41
TraesCS2A01G363800.1	Wheat	nucleus	61.21	66.15
TraesCS2D01G361600.1	Wheat	nucleus	60.5	66.15
Zm00001d025823_P001	Maize	nucleus	65.12	65.83
GSMUA_Achr11P...	Banana	nucleus	45.55	60.09
GSMUA_Achr8P12710_001	Banana	nucleus	46.98	57.14
Os02t0618400-02	Rice	nucleus	58.01	56.4
GSMUA_Achr4P29230_001	Banana	nucleus	40.57	55.88
GSMUA_Achr11P...	Banana	nucleus	44.13	53.91
GSMUA_Achr1P03450_001	Banana	nucleus	43.42	50.21
VIT_05s0049g02260.t01	Wine grape	nucleus	44.48	48.83
KRG90311	Soybean	nucleus	44.13	47.69
PGSC0003DMT400069955	Potato	nucleus	38.43	47.16
KRG92245	Soybean	nucleus	42.35	46.85
Solyc05g053150.1.1	Tomato	nucleus	37.72	46.29
Solyc09g090790.2.1	Tomato	nucleus	41.28	46.22
KRH04452	Soybean	nucleus	43.42	46.04
PGSC0003DMT400003796	Potato	nucleus	41.28	45.85
Os03t0142600-00	Rice	nucleus	40.21	45.75
KRH34553	Soybean	nucleus	43.06	45.49
CDY61190	Canola	nucleus	41.64	44.83
CDX77436	Canola	nucleus	41.28	44.62
Solyc02g089190.1.1	Tomato	nucleus	37.72	44.35
CDY49231	Canola	nucleus	41.99	44.03
Bra015029.1-P	Field mustard	nucleus	42.35	43.91
VIT_14s0083g01060.t01	Wine grape	nucleus	38.08	43.32
PGSC0003DMT400003479	Potato	nucleus	36.65	43.28
AT3G24310.1	Thale cress	nucleus	41.28	43.12
CDX94829	Canola	nucleus	41.64	42.86
Bra028369.1-P	Field mustard	nucleus	41.64	42.7
CDX93006	Canola	nucleus	41.64	42.7
Bra001941.1-P	Field mustard	nucleus	41.64	42.7
CDY64694	Canola	nucleus	40.93	41.97
AT4G13480.1	Thale cress	nucleus	38.08	41.0
Bra025410.1-P	Field mustard	nucleus	37.01	38.81
CDX86354	Canola	nucleus	37.01	38.81
KRH33568	Soybean	nucleus	43.77	38.44
CDX85285	Canola	nucleus	36.65	38.15
CDY19978	Canola	nucleus	35.94	37.83
Bra036202.1-P	Field mustard	nucleus	35.94	37.83
CDY00083	Canola	nucleus	36.3	37.78
KRH01379	Soybean	nucleus	34.52	37.6
Bra020744.1-P	Field mustard	nucleus	33.81	36.97
CDY45895	Canola	nucleus	33.81	36.97
AT3G30210.1	Thale cress	nucleus	36.3	36.96
KRH45095	Soybean	nucleus	33.81	34.55
Os12t0567300-00	Rice	nucleus	29.54	34.3
KRH01378	Soybean	nucleus	33.81	34.05
Os11t0700500-01	Rice	nucleus	28.11	33.33
Os01t0975300-01	Rice	vacuole	23.84	31.9
CDY35782	Canola	nucleus	20.64	28.29
Os11t0684000-01	Rice	nucleus	28.47	28.07
Os01t0298400-01	Rice	extracellular, nucleus	28.83	27.65
Os01t0637800-00	Rice	mitochondrion, nucleus, plastid	25.62	25.9
Os07t0688200-01	Rice	nucleus	27.4	25.67
Os03t0315400-01	Rice	nucleus	29.89	25.53
Os01t0128000-01	Rice	nucleus	31.32	25.14
Os05t0132700-01	Rice	nucleus	13.17	17.21

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:4336355	UniProt:A0A0P0WCH5	ProteinID:BAS90011.1	ncoils:Coil
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	EnsemblPlantsGene:Os04g0508500
EnsemblPlants:Os04t0508500-01	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF574	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000393BAC5	RefSeq:XP_015634463.1	SEG:seg	:

Description

R2R3-MYBSimilar to OSIGBa0101P20.9 protein. (Os04t0508500-01)

Coordinates

chr4:-:25405125..25407689

Molecular Weight (calculated)

30660.9 Da

IEP (calculated)

7.572

GRAVY (calculated)

-0.640

Length

281 amino acids

Sequence
(BLAST)

001: MAAAEVQSAA GWGRQLQQDG GGWRKGPWTS QEDALLVEHV RQHGEGRWNS VSKLTGLKRS GKSCRLRWVN YLRPDLKRGK ITPQEESIIV QLHALWGNRW
101: STIARSLPGR TDNEIKNYWR THFKKGKPSK NIERARARFL KQRREMQQSQ QLQQPTLMPT PTPQSKDIIV AETGDARTDD DAGGAAAAVA PSSSSSSLSM
201: GGGEAEDLIM HQDAMDDLMM CPAMSYHLIL HGAAVAGHQL SDGGGSCCAS TSEDYGSSED DGATWGSLWN LDGAAGACTL W

Best Arabidopsis Sequence Match ( AT4G13480.1 )
(BLAST)

001: MVEEVWRKGP WTAEEDRLLI EYVRVHGEGR WNSVSKLAGL KRNGKSCRLR WVNYLRPDLK RGQITPHEES IILELHAKWG NRWSTIARSL PGRTDNEIKN
101: YWRTHFKKKA KPTTNNAEKI KSRLLKRQHF KEQREIELQQ EQQLFQFDQL GMKKIISLLE ENNSSSSSDG GGDVFYYPDQ ITHSSKPFGY NSNSLEEQLQ
201: GRFSPVNIPD ANTMNEDNAI WDGFWNMDVV NGHGGNLGVV AATAACGPRK PYFHNLVIPF C

Arabidopsis Description

AtMYB79Myb domain protein 79 [Source:UniProtKB/TrEMBL;Acc:Q9T0G9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.