Factsheet for VIT_05s0049g02260.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55348	Soybean	nucleus	41.02	84.68
KRH11843	Soybean	nucleus	40.62	83.87
KRH62917	Soybean	nucleus	33.98	83.65
KRH75688	Soybean	nucleus	33.98	80.56
KRH33348	Soybean	nucleus	32.03	80.39
KRG90311	Soybean	nucleus	67.97	66.92
KRH04452	Soybean	nucleus	68.36	66.04
KRG92245	Soybean	nucleus	65.23	65.75
KRH34553	Soybean	nucleus	66.8	64.29
VIT_08s0007g04830.t01	Wine grape	nucleus	29.69	61.79
PGSC0003DMT400069955	Potato	nucleus	54.3	60.7
Solyc05g053150.1.1	Tomato	nucleus	54.3	60.7
Solyc09g090790.2.1	Tomato	nucleus	59.38	60.56
PGSC0003DMT400003796	Potato	nucleus	58.98	59.68
AT3G24310.1	Thale cress	nucleus	60.55	57.62
CDY61190	Canola	nucleus	58.2	57.09
GSMUA_Achr11P...	Banana	nucleus	46.48	55.87
KRH33568	Soybean	nucleus	69.14	55.31
CDY49231	Canola	nucleus	57.42	54.85
CDX77436	Canola	nucleus	55.47	54.62
AT4G13480.1	Thale cress	nucleus	55.47	54.41
Bra028369.1-P	Field mustard	nucleus	58.2	54.38
CDY64694	Canola	nucleus	58.2	54.38
Bra015029.1-P	Field mustard	nucleus	57.03	53.87
CDX94829	Canola	nucleus	57.42	53.85
CDX93006	Canola	nucleus	57.42	53.65
Bra001941.1-P	Field mustard	nucleus	57.42	53.65
GSMUA_Achr11P...	Banana	nucleus	47.66	53.04
GSMUA_Achr8P12710_001	Banana	nucleus	47.66	52.81
GSMUA_Achr4P29230_001	Banana	nucleus	41.8	52.45
Zm00001d048383_P001	Maize	nucleus	44.92	49.57
GSMUA_Achr1P03450_001	Banana	nucleus	46.88	49.38
EER92876	Sorghum	nucleus	47.66	48.22
Zm00001d027623_P001	Maize	nucleus	46.88	48.19
HORVU6Hr1G057670.3	Barley	nucleus	50.0	47.41
VIT_14s0083g01060.t01	Wine grape	nucleus	45.7	47.37
Os03t0142600-00	Rice	nucleus	45.7	47.37
Zm00001d017243_P001	Maize	nucleus	51.56	46.98
EES07157	Sorghum	nucleus	52.73	46.88
TraesCS4B01G344000.1	Wheat	nucleus	44.53	46.34
HORVU0Hr1G005100.1	Barley	nucleus	40.62	46.22
TraesCS4D01G339100.1	Wheat	nucleus	44.53	46.15
TraesCS2B01G381800.1	Wheat	nucleus	46.09	45.74
TraesCS6A01G227700.1	Wheat	nucleus	48.83	45.62
TraesCS6B01G254200.1	Wheat	nucleus	48.83	45.62
TraesCS2A01G363800.1	Wheat	nucleus	46.09	45.38
Os02t0618400-02	Rice	nucleus	51.17	45.33
Zm00001d025823_P001	Maize	nucleus	49.22	45.32
TraesCS5A01G512700.1	Wheat	nucleus	43.75	45.16
TraesCS2D01G361600.1	Wheat	nucleus	45.31	45.14
TraesCS6D01G207300.1	Wheat	nucleus	48.44	45.09
KXG26684	Sorghum	nucleus	49.61	45.04
HORVU4Hr1G084360.3	Barley	nucleus	47.27	44.98
Os04t0508500-01	Rice	nucleus	48.83	44.48
HORVU2Hr1G087990.1	Barley	nucleus	44.92	44.4
VIT_14s0066g01090.t01	Wine grape	nucleus	30.08	40.74
Zm00001d051117_P001	Maize	nucleus	42.97	39.43
VIT_06s0004g04140.t01	Wine grape	nucleus	33.2	33.2
VIT_07s0005g01950.t01	Wine grape	nucleus	34.38	32.35
VIT_01s0011g03730.t01	Wine grape	nucleus	33.2	29.51
VIT_05s0077g00500.t01	Wine grape	nucleus	34.38	28.76
VIT_17s0000g03560.t01	Wine grape	nucleus	34.38	26.83

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100263072	wikigene:100263072	MapMan:15.5.2.1	EMBL:AM474331	ProteinID:CAN70655
ProteinID:CAN70655.1	ProteinID:CCB48641	ProteinID:CCB48641.1	ncoils:Coil	UniProt:F6H8U8	EMBL:FN595496
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100263072	wikigene:LOC100263072
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF574	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002109033	ArrayExpress:VIT_05s0049g02260	EnsemblPlantsGene:VIT_05s0049g02260	EnsemblPlants:VIT_05s0049g02260.t01
RefSeq:XP_002282421	RefSeq:XP_002282421.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:9921411..9922416

Molecular Weight (calculated)

29663.0 Da

IEP (calculated)

9.340

GRAVY (calculated)

-0.893

Length

256 amino acids

Sequence
(BLAST)

001: MAGHLGWGII EEGWRKGPWT AEEDRLLTEY VKLHGEGRWN SVARLAGLRR NGKSCRLRWV NYLRPDLKRG QITPHEENII LELHARWGNR WSTIARSLPG
101: RTDNEIKNYW RTHFKKKGKL PSDKSEKAKT RLLRKQQFYQ QQQQQQQQQQ QQQQQQLNQL DLKRIMALLD QPDIGDTPMA QARQDLGSCI YSTHHAAEEH
201: GYVHLPIPNA DVSTQESSSE DMLWDGLWNL DDFHGNLSAA CAASKASLHH LVAPFY

Best Arabidopsis Sequence Match ( AT3G24310.1 )
(BLAST)

001: MSLWGGMGGG WGMVEEGWRK GPWTAEEDRL LIDYVQLHGE GRWNSVARLA GLKRNGKSCR LRWVNYLRPD LKRGQITPHE ETIILELHAK WGNRWSTIAR
101: SLPGRTDNEI KNYWRTHFKK KTKSPTNSAE KTKNRILKRQ QFQQQRQMEL QQEQQLLQFN QIDMKKIMSL LDDDNNNGDN TFSSSSSGES GALYVPHQIT
201: HSTTTSGCEP NSNGYYPVVP VTIPEANVNE DNAIWDGLWN LDFEGQGSFG GAACAPRKHY FQNMVIPFC

Arabidopsis Description

MYB305MYB305 [Source:UniProtKB/TrEMBL;Acc:A0A178VHM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.