Factsheet for VIT_17s0000g03560.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P01370_001	Banana	nucleus	31.4	83.06
GSMUA_Achr10P...	Banana	nucleus	35.37	66.29
GSMUA_Achr1P21020_001	Banana	nucleus	36.28	61.03
GSMUA_Achr8P18460_001	Banana	nucleus	41.46	54.62
VIT_08s0007g04830.t01	Wine grape	nucleus	19.21	51.22
GSMUA_Achr2P22640_001	Banana	nucleus	44.21	49.66
VIT_14s0066g01090.t01	Wine grape	nucleus	27.13	47.09
GSMUA_Achr6P09760_001	Banana	nucleus	43.9	46.75
GSMUA_Achr3P21060_001	Banana	nucleus	42.99	46.53
VIT_01s0011g03730.t01	Wine grape	nucleus	40.55	46.18
KRH41648	Soybean	nucleus	43.6	45.83
KRH60346	Soybean	nucleus	44.21	45.74
GSMUA_Achr11P...	Banana	nucleus	43.6	45.4
VIT_07s0005g01950.t01	Wine grape	nucleus	35.98	43.38
KRH48497	Soybean	nucleus	38.72	40.84
VIT_05s0077g00500.t01	Wine grape	nucleus	36.59	39.22
Zm00001d040019_P001	Maize	nucleus	42.99	38.95
KRH39173	Soybean	nucleus	36.28	38.39
Zm00001d008528_P001	Maize	nucleus	42.07	38.12
Os01t0128000-01	Rice	nucleus	40.55	38.0
TraesCS3B01G039100.1	Wheat	nucleus	39.94	37.32
HORVU3Hr1G004050.1	Barley	nucleus	39.94	37.32
TraesCS3D01G036200.1	Wheat	nucleus	39.02	37.21
TraesCS3A01G044700.1	Wheat	nucleus	39.02	36.99
EES00381	Sorghum	nucleus	41.77	35.22
VIT_05s0049g02260.t01	Wine grape	nucleus	26.83	34.38
VIT_06s0004g04140.t01	Wine grape	nucleus	25.91	33.2
VIT_14s0083g01060.t01	Wine grape	nucleus	25.0	33.2

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100242243	wikigene:100242243	MapMan:15.5.2.1	ProteinID:CBI15464	ProteinID:CBI15464.3
UniProt:D7SJ03	EMBL:FN594950	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100242243	wikigene:LOC100242243	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF510	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015CA133	ArrayExpress:VIT_17s0000g03560
EnsemblPlantsGene:VIT_17s0000g03560	EnsemblPlants:VIT_17s0000g03560.t01	RefSeq:XP_002276526	RefSeq:XP_002276526.2	SEG:seg	:

Description

No Description!

Coordinates

chr17:-:3454010..3455619

Molecular Weight (calculated)

37065.2 Da

IEP (calculated)

5.870

GRAVY (calculated)

-0.670

Length

328 amino acids

Sequence
(BLAST)

001: MSTLSKSASS SSEEDAELRR GPWTLEEDTL LIHYIASHGE GRWNLLAKCS GLRRTGKSCR LRWLNYLKPD VKRGNLTPQE QLLILELHSK WGNRWSKIAQ
101: HLPGRTDNEI KNYWRTRVQK QARHLKIDSN SRAFQDVIRC VWMPRLLQKI EGSSSTSSTT SQVSIIPQSL NHADSQQHSA AAPPPVVAQA PVQGPLSINE
201: TINNLEHNEK NSSSENCTSP SICSSESMNI SQISQIPDYP TSPFQAMSNS DDYSTLLKGY YNVDNSNYEM ETFNLASMSA PQGDFENPVG DCPMVESNWV
301: DSDLADSLWN MDELWQFWKL QEGAPRLF

Best Arabidopsis Sequence Match ( AT1G25340.1 )
(BLAST)

001: MSNITKKKCN GNEEGAEQRK GPWTLEEDTL LTNYISHNGE GRWNLLAKSS GLKRAGKSCR LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKISK
101: YLPGRTDNDI KNYWRTRVQK QARQLNIDSN SHKFIEVVRS FWFPRLINEI KDNSYTNNIK ANAPDLLGPI LRDSKDLGFN NMDCSTSMSE DLKKTSQFMD
201: FSDLETTMSL EGSRGGSSQC VSEVYSSFPC LEEEYMVAVM GSSDISALHD CHVADSKYED DVTQDLMWNM DDIWQFNEYA HFN

Arabidopsis Description

MYB116myb domain protein 116 [Source:TAIR;Acc:AT1G25340]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.