Factsheet for Os01t0298400-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 25047395

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G413700.1	Wheat	nucleus	66.55	66.55
TraesCS3B01G453300.1	Wheat	nucleus	67.92	64.82
TraesCS3A01G418100.1	Wheat	nucleus	67.24	63.96
HORVU3Hr1G092820.1	Barley	nucleus	67.92	60.12
EES00624	Sorghum	nucleus	60.75	58.17
Zm00001d040594_P001	Maize	nucleus	57.34	55.45
Zm00001d009066_P001	Maize	nucleus	58.02	53.46
Os11t0684000-01	Rice	nucleus	45.05	46.32
Os03t0315400-01	Rice	nucleus	50.51	44.98
Os07t0688200-01	Rice	nucleus	43.69	42.67
GSMUA_Achr11P...	Banana	nucleus	43.69	37.21
Os11t0700500-01	Rice	nucleus	27.99	34.6
Os05t0132700-01	Rice	nucleus	24.57	33.49
Os12t0567300-00	Rice	nucleus	27.3	33.06
Os01t0128000-01	Rice	nucleus	38.91	32.57
Os01t0637800-00	Rice	mitochondrion, nucleus, plastid	30.03	31.65
Os02t0618400-02	Rice	nucleus	28.67	29.07
Os01t0975300-01	Rice	vacuole	20.82	29.05
Os04t0508500-01	Rice	nucleus	27.65	28.83
Os03t0142600-00	Rice	nucleus	24.23	28.74

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:4326726	EMBL:AK241615	ProteinID:BAB55768.1	ProteinID:BAB67851.1
ProteinID:BAF04724.1	ProteinID:BAS71697.1	ProteinID:EAZ11558.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	EnsemblPlantsGene:Os01g0298400	EnsemblPlants:Os01t0298400-01	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF659	UniProt:Q93V35	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000009EE26	RefSeq:XP_015630818.1	SEG:seg	:	:	:

Description

Myb transcription factor domain containing protein. (Os01t0298400-01)

Coordinates

chr1:+:10934895..10935992

Molecular Weight (calculated)

32508.6 Da

IEP (calculated)

5.988

GRAVY (calculated)

-0.589

Length

293 amino acids

Sequence
(BLAST)

001: MDAPCGWTTS AAAAVAEEED VRRGPWTVEE DAVLAGYVAA NGEGRWNELA RAAGLRRTGK SCRLRWLNYL RPDVRRGDFT PQEQLLILEL HFRWGNRWSR
101: IAQHMPGRTD NEIKNYWRTR VQKHAKQLGC DVNSRQFKDV MRHLWMPRLV ERIHAAAASS ERAAPPPCAA APASHSGMCH SPDPSTTTSS MAGSSVTHGE
201: QFPSSTNHHL MTMASVTTAA ADWSSEQCGS GSATSTSVGI SYDMFEGSWS ELLARAYDDD GADSSLLPDF QMADTGDNCW WSNLEDIWSQ QPY

Best Arabidopsis Sequence Match ( AT1G48000.1 )
(BLAST)

001: MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ

Arabidopsis Description

MYB112MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q94CJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.