Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035604_P001 | Maize | nucleus | 78.9 | 66.03 |
| TraesCS1D01G043300.1 | Wheat | nucleus | 48.05 | 58.27 |
| HORVU1Hr1G008810.3 | Barley | nucleus | 47.4 | 56.59 |
| EES17592 | Sorghum | nucleus | 60.39 | 55.69 |
| TraesCS1B01G055200.1 | Wheat | nucleus | 48.05 | 55.22 |
| TraesCS1A01G042700.1 | Wheat | nucleus | 46.43 | 54.37 |
| GSMUA_Achr6P15370_001 | Banana | nucleus | 35.39 | 52.15 |
| GSMUA_Achr10P... | Banana | nucleus | 37.01 | 48.31 |
| AT5G59780.3 | Thale cress | nucleus | 35.39 | 46.38 |
| GSMUA_Achr7P18200_001 | Banana | nucleus | 35.71 | 45.64 |
| GSMUA_Achr5P28350_001 | Banana | nucleus | 35.06 | 45.57 |
| KXG23736 | Sorghum | nucleus | 35.39 | 45.42 |
| PGSC0003DMT400040149 | Potato | nucleus | 32.14 | 45.41 |
| Solyc11g073120.1.1 | Tomato | nucleus | 31.82 | 45.16 |
| GSMUA_Achr11P... | Banana | nucleus | 35.06 | 44.81 |
| CDX71075 | Canola | nucleus | 34.09 | 43.57 |
| CDY49581 | Canola | nucleus | 33.44 | 43.46 |
| Bra002533.1-P | Field mustard | nucleus | 33.44 | 43.46 |
| KXG29192 | Sorghum | nucleus | 32.14 | 43.42 |
| Bra006694.1-P | Field mustard | nucleus | 34.09 | 43.39 |
| Bra020289.1-P | Field mustard | nucleus | 33.12 | 43.22 |
| CDY70097 | Canola | nucleus | 33.12 | 43.22 |
| CDX80230 | Canola | nucleus | 33.12 | 43.04 |
| CDX88722 | Canola | nucleus | 33.77 | 42.98 |
| VIT_06s0004g04140.t01 | Wine grape | nucleus | 35.39 | 42.58 |
| Solyc06g005330.2.1 | Tomato | nucleus | 32.47 | 42.37 |
| Bra018223.1-P | Field mustard | nucleus | 34.42 | 42.06 |
| KRH23019 | Soybean | nucleus | 35.06 | 40.91 |
| KRH10298 | Soybean | nucleus | 33.77 | 40.78 |
| AT3G46130.1 | Thale cress | nucleus | 34.09 | 40.7 |
| CDX86041 | Canola | nucleus | 34.42 | 38.13 |
| CDX99125 | Canola | nucleus | 34.42 | 38.13 |
| CDX86040 | Canola | nucleus | 34.42 | 38.13 |
| KRH24842 | Soybean | nucleus | 32.47 | 37.59 |
| KRH29850 | Soybean | nucleus | 32.47 | 37.59 |
| KXG29190 | Sorghum | nucleus | 23.05 | 33.49 |
| EER92876 | Sorghum | nucleus | 25.65 | 31.23 |
| EES07157 | Sorghum | nucleus | 27.27 | 29.17 |
| KXG26684 | Sorghum | nucleus | 26.62 | 29.08 |
| EES01143 | Sorghum | nucleus | 27.6 | 29.01 |
| EES00624 | Sorghum | nucleus | 26.3 | 26.47 |
| KXG36991 | Sorghum | nucleus | 28.57 | 25.73 |
| KXG39500 | Sorghum | nucleus | 27.27 | 25.0 |
| EES17207 | Sorghum | nucleus | 25.97 | 23.74 |
| EES10257 | Sorghum | nucleus | 25.97 | 21.92 |
| EES00381 | Sorghum | nucleus | 27.27 | 21.59 |
| KXG21220 | Sorghum | nucleus | 28.25 | 21.43 |
| KXG21221 | Sorghum | nucleus | 27.6 | 17.82 |
Protein Annotations
| EnsemblPlants:OQU77249 | EnsemblPlantsGene:SORBI_3009G016633 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF591 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:OQU77249 | ProteinID:OQU77249.1 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000B423FFE | UniProt:A0A1Z5R158 | MapMan:15.5.2.1 | : |
Description
hypothetical protein
Coordinates
chr9:+:1556843..1558610
Molecular Weight (calculated)
34250.6 Da
IEP (calculated)
7.422
GRAVY (calculated)
-0.796
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSLLCRRR NHKKDGDGEH QIIISTSTPA AMRKGPWTDE EDEQLVRFVR LFGERRWDFL AKVSGLRRTG KSCRLRWVNY LHPGLRRGRI TADEERRIVE
101: LHAQWGSRWS RIARSLPGRT DNEIKNFWRT RTRKKALEER RAAGAAAAVT ATAEPAASSS SSVTMISECR PGSPNSGAAT TSSSSGGSSS SLREERPGDE
201: DAELEEASTA TTAAGTTKQQ QQQQQPLPQE YYDGCSTMDQ LWNEIAAADA AAMSYVVDAC WNGAGHYYYG AAAAEPPPAS PPWEYCGPDF SLWRIDDQEY
301: YKKMLDSS
101: LHAQWGSRWS RIARSLPGRT DNEIKNFWRT RTRKKALEER RAAGAAAAVT ATAEPAASSS SSVTMISECR PGSPNSGAAT TSSSSGGSSS SLREERPGDE
201: DAELEEASTA TTAAGTTKQQ QQQQQPLPQE YYDGCSTMDQ LWNEIAAADA AAMSYVVDAC WNGAGHYYYG AAAAEPPPAS PPWEYCGPDF SLWRIDDQEY
301: YKKMLDSS
001: MKMMQEEGNR KGPWTEQEDI LLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP GLKRGKMTPQ EERLVLELHA KWGNRWSKIA RKLPGRTDNE
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG
Arabidopsis Description
ATMYB48myb domain protein 48 [Source:TAIR;Acc:AT3G46130]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.