Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018223.1-P | Field mustard | nucleus | 85.66 | 87.7 |
| AT5G59780.3 | Thale cress | nucleus | 75.19 | 82.55 |
| CDX86040 | Canola | nucleus | 86.43 | 80.22 |
| CDX99125 | Canola | nucleus | 85.66 | 79.5 |
| CDX86041 | Canola | nucleus | 85.66 | 79.5 |
| KRH10298 | Soybean | nucleus | 58.14 | 58.82 |
| KRH23019 | Soybean | nucleus | 59.3 | 57.95 |
| Solyc11g073120.1.1 | Tomato | nucleus | 48.06 | 57.14 |
| GSMUA_Achr2P16200_001 | Banana | nucleus | 44.96 | 56.59 |
| PGSC0003DMT400040149 | Potato | nucleus | 47.67 | 56.42 |
| HORVU5Hr1G021750.2 | Barley | nucleus | 51.55 | 56.12 |
| GSMUA_Achr6P15370_001 | Banana | nucleus | 45.35 | 55.98 |
| GSMUA_Achr10P... | Banana | nucleus | 48.84 | 55.75 |
| TraesCS5D01G095600.1 | Wheat | nucleus | 51.16 | 55.7 |
| VIT_06s0004g04140.t01 | Wine grape | nucleus | 55.04 | 55.47 |
| TraesCS5A01G083100.1 | Wheat | nucleus | 50.78 | 55.27 |
| TraesCS5B01G089200.1 | Wheat | nucleus | 50.78 | 55.27 |
| Solyc06g005330.2.1 | Tomato | nucleus | 49.22 | 53.81 |
| GSMUA_Achr10P... | Banana | nucleus | 44.19 | 53.77 |
| GSMUA_Achr9P28370_001 | Banana | nucleus | 44.19 | 53.27 |
| TraesCS4B01G143700.1 | Wheat | nucleus | 48.84 | 52.94 |
| TraesCS4D01G142300.1 | Wheat | nucleus | 48.84 | 52.94 |
| KRH29850 | Soybean | nucleus | 54.26 | 52.63 |
| GSMUA_Achr10P... | Banana | nucleus | 48.06 | 52.54 |
| TraesCS4A01G173300.2 | Wheat | nucleus | 48.45 | 52.52 |
| KXG23736 | Sorghum | nucleus | 48.84 | 52.5 |
| Os12t0567300-00 | Rice | nucleus | 49.22 | 52.48 |
| KRH24842 | Soybean | nucleus | 53.49 | 51.88 |
| GSMUA_Achr11P... | Banana | nucleus | 48.45 | 51.87 |
| Zm00001d030678_P001 | Maize | nucleus | 48.45 | 51.65 |
| KXG29192 | Sorghum | nucleus | 44.96 | 50.88 |
| GSMUA_Achr5P28350_001 | Banana | nucleus | 46.51 | 50.63 |
| Zm00001d048623_P002 | Maize | nucleus | 44.57 | 50.44 |
| Zm00001d041576_P001 | Maize | nucleus | 48.84 | 50.4 |
| GSMUA_Achr7P18200_001 | Banana | nucleus | 46.51 | 49.79 |
| Os11t0700500-01 | Rice | nucleus | 45.74 | 49.79 |
| GSMUA_Achr8P34340_001 | Banana | nucleus | 46.9 | 49.39 |
| GSMUA_Achr8P02640_001 | Banana | nucleus | 43.41 | 47.46 |
| TraesCS1D01G043300.1 | Wheat | nucleus | 43.8 | 44.49 |
| TraesCS1B01G055200.1 | Wheat | nucleus | 44.19 | 42.54 |
| TraesCS1A01G042700.1 | Wheat | nucleus | 43.02 | 42.21 |
| HORVU1Hr1G008810.3 | Barley | nucleus | 41.47 | 41.47 |
| TraesCS3D01G540600.1 | Wheat | nucleus | 39.92 | 40.23 |
| TraesCS3A01G535100.1 | Wheat | nucleus | 39.92 | 39.62 |
| TraesCS3B01G612200.2 | Wheat | nucleus | 40.31 | 39.39 |
| AT3G53200.1 | Thale cress | nucleus | 35.66 | 38.66 |
| KXG29190 | Sorghum | nucleus | 29.84 | 36.32 |
| AT3G01530.1 | Thale cress | nucleus | 27.91 | 34.95 |
| Os01t0975300-01 | Rice | vacuole | 27.91 | 34.29 |
| OQU77249 | Sorghum | nucleus | 40.7 | 34.09 |
| AT5G40350.1 | Thale cress | nucleus | 27.91 | 33.64 |
| AT3G27810.1 | Thale cress | nucleus | 29.07 | 33.19 |
| Zm00001d035605_P001 | Maize | nucleus | 41.47 | 32.72 |
| AT4G13480.1 | Thale cress | nucleus | 32.17 | 31.8 |
| EES17592 | Sorghum | nucleus | 41.09 | 31.74 |
| AT1G48000.1 | Thale cress | nucleus | 29.46 | 31.28 |
| AT2G47190.1 | Thale cress | nucleus | 32.56 | 30.77 |
| AT3G24310.1 | Thale cress | nucleus | 31.78 | 30.48 |
| AT3G30210.1 | Thale cress | nucleus | 32.56 | 30.43 |
| AT1G68320.1 | Thale cress | nucleus | 33.33 | 30.07 |
| Zm00001d035604_P001 | Maize | nucleus | 40.31 | 28.26 |
| AT1G25340.3 | Thale cress | nucleus | 32.95 | 27.6 |
| AT3G06490.1 | Thale cress | nucleus | 31.4 | 25.08 |
| AT5G49620.2 | Thale cress | nucleus | 30.62 | 24.61 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:823756 | UniProt:A0A2H1ZEJ2 | ProteinID:AEE78117.2 | ArrayExpress:AT3G46130 |
| EnsemblPlantsGene:AT3G46130 | RefSeq:AT3G46130 | TAIR:AT3G46130 | RefSeq:AT3G46130-TAIR-G | EnsemblPlants:AT3G46130.1 | TAIR:AT3G46130.1 |
| Symbol:ATMYB48 | Symbol:ATMYB48-1 | Symbol:ATMYB48-2 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009751 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | Symbol:MYB48 |
| InterPro:Myb_dom | RefSeq:NP_190199.2 | PFAM:PF00249 | PO:PO:0000013 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF484 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001A7000D | SEG:seg | : |
Description
ATMYB48myb domain protein 48 [Source:TAIR;Acc:AT3G46130]
Coordinates
chr3:+:16945230..16946699
Molecular Weight (calculated)
29914.9 Da
IEP (calculated)
9.362
GRAVY (calculated)
-0.926
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMMQEEGNR KGPWTEQEDI LLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP GLKRGKMTPQ EERLVLELHA KWGNRWSKIA RKLPGRTDNE
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.