Factsheet for VIT_02s0025g03450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01
VIT_02s0033g00370.t01
VIT_02s0033g00390.t01
VIT_02s0033g00400.t01
VIT_02s0033g00410.t01
VIT_02s0033g00430.t01
VIT_02s0033g00450.t01
VIT_02s0033g00460.t01
VIT_06s0004g00570.t01
VIT_07s0005g01950.t01
VIT_08s0007g07230.t01
VIT_14s0006g01280.t01
VIT_14s0006g01290.t01
VIT_14s0006g01340.t01
VIT_14s0066g01220.t01
VIT_15s0046g01130.t01
VIT_16s0050g02530.t01
VIT_16s0098g00870.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	VIT_02s0033g00370.t01	AT1G56650.1	12917293
AT1G63650.1	VIT_02s0033g00390.t01	AT1G56650.1	12917293
AT1G63650.1	VIT_02s0033g00400.t01	AT1G56650.1	12917293
AT1G63650.1	VIT_02s0033g00410.t01	AT1G56650.1	12917293
AT1G63650.1	VIT_02s0033g00430.t01	AT1G56650.1	12917293
AT1G63650.1	VIT_02s0033g00450.t01	AT1G56650.1	12917293
AT1G63650.1	VIT_02s0033g00460.t01	AT1G56650.1	12917293
AT1G63650.1	VIT_14s0006g01280.t01	AT1G56650.1	12917293
AT1G63650.1	VIT_14s0006g01290.t01	AT1G56650.1	12917293
AT1G63650.1	VIT_14s0006g01340.t01	AT1G56650.1	12917293
AT1G63650.1	VIT_02s0033g00370.t01	AT1G56650.1	15361138
AT1G63650.1	VIT_02s0033g00390.t01	AT1G56650.1	15361138
AT1G63650.1	VIT_02s0033g00400.t01	AT1G56650.1	15361138
AT1G63650.1	VIT_02s0033g00410.t01	AT1G56650.1	15361138
AT1G63650.1	VIT_02s0033g00430.t01	AT1G56650.1	15361138
AT1G63650.1	VIT_02s0033g00450.t01	AT1G56650.1	15361138
AT1G63650.1	VIT_02s0033g00460.t01	AT1G56650.1	15361138
AT1G63650.1	VIT_14s0006g01280.t01	AT1G56650.1	15361138
AT1G63650.1	VIT_14s0006g01290.t01	AT1G56650.1	15361138
AT1G63650.1	VIT_14s0006g01340.t01	AT1G56650.1	15361138
AT1G63650.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G63650.1	VIT_02s0033g00370.t01	AT1G66370.1	15361138
AT1G63650.1	VIT_02s0033g00390.t01	AT1G66370.1	15361138
AT1G63650.1	VIT_02s0033g00400.t01	AT1G66370.1	15361138
AT1G63650.1	VIT_02s0033g00410.t01	AT1G66370.1	15361138
AT1G63650.1	VIT_02s0033g00430.t01	AT1G66370.1	15361138
AT1G63650.1	VIT_02s0033g00450.t01	AT1G66370.1	15361138
AT1G63650.1	VIT_02s0033g00460.t01	AT1G66370.1	15361138
AT1G63650.1	VIT_14s0006g01280.t01	AT1G66370.1	15361138
AT1G63650.1	VIT_14s0006g01290.t01	AT1G66370.1	15361138
AT1G63650.1	VIT_14s0006g01340.t01	AT1G66370.1	15361138
AT1G63650.1	VIT_02s0033g00370.t01	AT1G66380.1	15361138
AT1G63650.1	VIT_02s0033g00390.t01	AT1G66380.1	15361138
AT1G63650.1	VIT_02s0033g00400.t01	AT1G66380.1	15361138
AT1G63650.1	VIT_02s0033g00410.t01	AT1G66380.1	15361138
AT1G63650.1	VIT_02s0033g00430.t01	AT1G66380.1	15361138
AT1G63650.1	VIT_02s0033g00450.t01	AT1G66380.1	15361138
AT1G63650.1	VIT_02s0033g00460.t01	AT1G66380.1	15361138
AT1G63650.1	VIT_14s0006g01280.t01	AT1G66380.1	15361138
AT1G63650.1	VIT_14s0006g01290.t01	AT1G66380.1	15361138
AT1G63650.1	VIT_14s0006g01340.t01	AT1G66380.1	15361138
AT1G63650.1	VIT_02s0033g00370.t01	AT1G66390.1	12917293
AT1G63650.1	VIT_02s0033g00390.t01	AT1G66390.1	12917293
AT1G63650.1	VIT_02s0033g00400.t01	AT1G66390.1	12917293
AT1G63650.1	VIT_02s0033g00410.t01	AT1G66390.1	12917293
AT1G63650.1	VIT_02s0033g00430.t01	AT1G66390.1	12917293
AT1G63650.1	VIT_02s0033g00450.t01	AT1G66390.1	12917293
AT1G63650.1	VIT_02s0033g00460.t01	AT1G66390.1	12917293
AT1G63650.1	VIT_14s0006g01280.t01	AT1G66390.1	12917293
AT1G63650.1	VIT_14s0006g01290.t01	AT1G66390.1	12917293
AT1G63650.1	VIT_14s0006g01340.t01	AT1G66390.1	12917293
AT1G63650.1	VIT_02s0033g00370.t01	AT1G66390.1	15361138
AT1G63650.1	VIT_02s0033g00390.t01	AT1G66390.1	15361138
AT1G63650.1	VIT_02s0033g00400.t01	AT1G66390.1	15361138
AT1G63650.1	VIT_02s0033g00410.t01	AT1G66390.1	15361138
AT1G63650.1	VIT_02s0033g00430.t01	AT1G66390.1	15361138
AT1G63650.1	VIT_02s0033g00450.t01	AT1G66390.1	15361138
AT1G63650.1	VIT_02s0033g00460.t01	AT1G66390.1	15361138
AT1G63650.1	VIT_14s0006g01280.t01	AT1G66390.1	15361138
AT1G63650.1	VIT_14s0006g01290.t01	AT1G66390.1	15361138
AT1G63650.1	VIT_14s0006g01340.t01	AT1G66390.1	15361138
AT1G63650.1	VIT_07s0005g01950.t01	AT2G47190.1	12056412
AT1G63650.1	VIT_06s0004g00570.t01	AT3G13540.1	15361138
AT1G63650.1	VIT_08s0007g07230.t01	AT3G13540.1	15361138
AT1G63650.1	VIT_14s0066g01220.t01	AT3G27920.1	12917293
AT1G63650.1	VIT_14s0066g01220.t01	AT3G27920.1	15361138
AT1G63650.1	VIT_14s0066g01220.t01	AT5G14750.1	14627722
AT1G63650.1	VIT_14s0066g01220.t01	AT5G14750.1	15361138
AT1G63650.1	VIT_14s0066g01220.t01	AT5G14750.1	17644729
AT1G63650.1	VIT_16s0098g00870.t01	AT5G24520.1	12917293
AT1G63650.1	VIT_14s0066g01220.t01	AT5G40330.1	15361138
AT1G63650.1	VIT_15s0046g01130.t01	AT5G53200.1	12917293
AT1G63650.1	VIT_16s0050g02530.t01	AT5G53200.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45357	Canola	cytosol, golgi, nucleus	21.02	69.47
Solyc08g081140.2.1	Tomato	nucleus	56.85	57.03
VIT_15s0046g02560.t01	Wine grape	nucleus	58.12	55.39
PGSC0003DMT400032140	Potato	nucleus	30.89	53.89
GSMUA_Achr11P...	Banana	nucleus	40.29	53.72
CDY39747	Canola	nucleus	46.97	52.77
Bra025508.1-P	Field mustard	nucleus	51.27	51.19
AT1G63650.1	Thale cress	nucleus	48.57	51.17
GSMUA_Achr8P11430_001	Banana	nucleus	44.27	50.92
AT5G41315.2	Thale cress	nucleus	52.23	50.85
CDY58950	Canola	nucleus	46.66	50.78
CDY25513	Canola	nucleus	46.5	50.61
CDY34367	Canola	nucleus	47.61	50.17
Bra027796.1-P	Field mustard	nucleus	48.25	50.0
Bra027653.1-P	Field mustard	nucleus	47.45	50.0
CDY08314	Canola	nucleus	47.93	49.75
Os04t0557500-00	Rice	mitochondrion, plasma membrane	14.17	49.44
GSMUA_Achr11P...	Banana	nucleus	41.72	47.46
GSMUA_Achr11P...	Banana	nucleus	44.59	47.22
GSMUA_Achr5P20600_001	Banana	nucleus	44.11	47.11
CDY72121	Canola	nucleus	21.02	42.86
TraesCSU01G116000.1	Wheat	nucleus	29.3	40.35
TraesCS2A01G409600.2	Wheat	nucleus, plastid	35.67	40.14
TraesCS2D01G406900.1	Wheat	nucleus	36.15	40.04
HORVU2Hr1G096810.5	Barley	nucleus	35.67	39.93
TraesCS2B01G428000.1	Wheat	nucleus	35.83	39.27
TraesCS2D01G406800.1	Wheat	plastid	28.98	39.14
TraesCS2A01G409400.1	Wheat	nucleus	34.87	38.56
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	33.28	37.39
TraesCS4D01G224600.1	Wheat	nucleus	32.96	37.16
Zm00001d000236_P001	Maize	nucleus, plastid	32.64	36.8
OQU82120	Sorghum	nucleus	34.39	36.73
TraesCSU01G029400.1	Wheat	nucleus	33.44	36.71
TraesCS4B01G397400.1	Wheat	nucleus	32.96	36.7
TraesCS5A01G489500.1	Wheat	nucleus	33.12	36.49
TraesCS4B01G397800.1	Wheat	nucleus	29.46	36.27
OQU82117	Sorghum	nucleus	34.08	36.27
Os04t0557800-00	Rice	mitochondrion	33.12	36.24
TraesCS5A01G558500.1	Wheat	nucleus	33.12	35.56
Zm00001d026147_P002	Maize	nucleus	34.87	35.55
Os01t0577300-00	Rice	cytosol	6.85	35.25
OQU81560	Sorghum	nucleus	32.96	35.14
TraesCS2D01G575600.3	Wheat	nucleus, plastid	32.17	34.3
TraesCSU01G237100.1	Wheat	nucleus	18.15	31.06
TraesCSU01G228400.1	Wheat	nucleus	18.15	31.06
VIT_07s0104g00090.t01	Wine grape	nucleus	34.39	31.03
TraesCS4B01G397300.1	Wheat	nucleus	18.47	28.5
Os01t0576100-00	Rice	nucleus	14.01	28.03
OQU82119	Sorghum	nucleus	23.57	27.11
VIT_00s0824g00020.t01	Wine grape	nucleus	7.17	26.32
VIT_02s0025g02610.t01	Wine grape	nucleus	14.81	25.76
Os11t0258700-00	Rice	mitochondrion	18.63	24.22
VIT_15s0048g02820.t01	Wine grape	nucleus	17.99	22.74
VIT_07s0141g01060.t01	Wine grape	nucleus	17.04	21.79
VIT_07s0205g00160.t01	Wine grape	nucleus	6.37	21.51
VIT_02s0012g01320.t01	Wine grape	nucleus	21.5	20.36
VIT_03s0088g01240.t01	Wine grape	nucleus	10.67	19.48
VIT_07s0205g00190.t01	Wine grape	nucleus	10.35	19.23
VIT_15s0046g00320.t01	Wine grape	nucleus	18.31	19.04
VIT_00s1314g00010.t01	Wine grape	nucleus	10.03	18.86
VIT_07s0205g00170.t01	Wine grape	cytosol	3.66	18.25
VIT_07s0205g00180.t01	Wine grape	nucleus	9.87	17.71
VIT_00s0927g00010.t01	Wine grape	nucleus	6.37	17.54
VIT_00s0384g00020.t01	Wine grape	nucleus	4.3	13.71

Protein Annotations

EntrezGene:100258234	wikigene:100258234	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB58347	ProteinID:CCB58347.1
ncoils:Coil	UniProt:F6HUC4	EMBL:FN596251	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100258234	wikigene:LOC100258234
InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF38
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001982C83	ArrayExpress:VIT_02s0025g03450	EnsemblPlantsGene:VIT_02s0025g03450	EnsemblPlants:VIT_02s0025g03450.t01
unigene:Vvi.19752	RefSeq:XP_002270239	RefSeq:XP_002270239.2	InterPro:bHLH_dom	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:2943402..2948110

Molecular Weight (calculated)

70641.6 Da

IEP (calculated)

4.871

GRAVY (calculated)

-0.486

Length

628 amino acids

Sequence
(BLAST)

001: MDTEPQNQGV PENLRNQLAL AVRNIQWSYA IFWSISTRQP GVLEWGDGYY NGDIKTRKTV QAVEFNADQM GLQRSEQLRE LYESLSIGES NPQPRRHSAA
101: LSPEDLTDAE WYYLVCMSFV FDIGQGLPGR TLASGQPIWL CNAPYAESKV FSRSLLAKTV VCFPYLGGVI ELGATEMVLE DPSLIQHIKT SFLEIPYPML
201: SRISNSRKIR EDKDPASAEL DHNFLDTNLN PAVLEVGSPN NSSDGFELNQ LGEESIMVDC LNGGGASQVQ SWQLLEDEFS NCVHNSMNSS DCISQTIMNP
301: EKVVPISKGE KVNDHCLVDL QECNNTKLTS LDLRDDLHYQ CILSSLLSSN QLILGPCFRN SNKESSFVSW KKRGLMGTQK LNTGTQQKLL KKVLFEVAQM
401: HGGCLMSSRD NNGDNDEIWR PEADEITLNH VLSERKRREK INERFSVLRS LVPSINQVNK VSVLDDTIEY LKELKRRVEE LESSKESTEI EARTSRRTPD
501: TAERTSDNYG NDRVGNGKKP LLNKRKACDI DEMEPDSNRV LLKDDSAENI TVNMNEKDIL IELRCPWREC LLLEIMDAVS NLHLDSQSVQ SASVDGILSL
601: TIKSKFKGSS FASAETIRQA LQRVVPKC

Best Arabidopsis Sequence Match ( AT5G41315.1 )
(BLAST)

001: MATGQNRTTV PENLKKHLAV SVRNIQWSYG IFWSVSASQS GVLEWGDGYY NGDIKTRKTI QASEIKADQL GLRRSEQLSE LYESLSVAES SSSGVAAGSQ
101: VTRRASAAAL SPEDLADTEW YYLVCMSFVF NIGEGMPGRT FANGEPIWLC NAHTADSKVF SRSLLAKSAA VKTVVCFPFL GGVVEIGTTE HITEDMNVIQ
201: CVKTSFLEAP DPYATILPAR SDYHIDNVLD PQQILGDEIY APMFSTEPFP TASPSRTTNG FDQEHEQVAD DHDSFMTERI TGGASQVQSW QLMDDELSNC
301: VHQSLNSSDC VSQTFVEGAA GRVAYGARKS RVQRLGQIQE QQRNVKTLSF DPRNDDVHYQ SVISTIFKTN HQLILGPQFR NCDKQSSFTR WKKSSSSSSG
401: TATVTAPSQG MLKKIIFDVP RVHQKEKLML DSPEARDETG NHAVLEKKRR EKLNERFMTL RKIIPSINKI DKVSILDDTI EYLQELERRV QELESCREST
501: DTETRGTMTM KRKKPCDAGE RTSANCANNE TGNGKKVSVN NVGEAEPADT GFTGLTDNLR IGSFGNEVVI ELRCAWREGV LLEIMDVISD LHLDSHSVQS
601: STGDGLLCLT VNCKHKGSKI ATPGMIKEAL QRVAWIC

Arabidopsis Description

GL3Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1R7T3F7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.