Factsheet for Os01t0577300-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0127450-00
Os01t0576100-00
Os01t0577300-00
Os01t0695900-01
Os02t0682500-01
Os04t0557200-01
Os04t0557500-00
Os04t0557800-00
Os11t0258700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	Os01t0576100-00	AT1G63650.1	12917293
AT1G63650.1	Os01t0577300-00	AT1G63650.1	12917293
AT1G63650.1	Os04t0557200-01	AT1G63650.1	12917293
AT1G63650.1	Os04t0557500-00	AT1G63650.1	12917293
AT1G63650.1	Os04t0557800-00	AT1G63650.1	12917293
AT1G63650.1	Os11t0258700-00	AT1G63650.1	12917293
AT1G63650.1	Os01t0127450-00	AT1G71030.1	15361138
AT1G63650.1	Os01t0695900-01	AT3G13540.1	15361138
AT1G63650.1	Os02t0682500-01	AT5G24520.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0576100-00	Rice	nucleus	90.16	35.03
TraesCSU01G237100.1	Wheat	nucleus	51.64	17.17
TraesCSU01G228400.1	Wheat	nucleus	51.64	17.17
TraesCS4B01G397300.1	Wheat	nucleus	48.36	14.5
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	55.74	12.16
Os09t0519100-00	Rice	nucleus	26.23	12.12
HORVU2Hr1G096810.5	Barley	nucleus	55.74	12.12
OQU82119	Sorghum	nucleus	53.28	11.9
TraesCS2A01G409600.2	Wheat	nucleus, plastid	53.28	11.65
Os11t0258700-00	Rice	mitochondrion	45.9	11.59
PGSC0003DMT400032140	Potato	nucleus	33.61	11.39
TraesCS4B01G397400.1	Wheat	nucleus	52.46	11.35
TraesCS2D01G406900.1	Wheat	nucleus	52.46	11.29
TraesCSU01G029400.1	Wheat	nucleus	52.46	11.19
Os04t0557800-00	Rice	mitochondrion	52.46	11.15
TraesCS2B01G428000.1	Wheat	nucleus	51.64	10.99
TraesCS2D01G406800.1	Wheat	plastid	41.8	10.97
Zm00001d000236_P001	Maize	nucleus, plastid	50.0	10.95
Os03t0229100-00	Rice	plastid	25.41	10.84
TraesCS5A01G489500.1	Wheat	nucleus	50.0	10.7
OQU82117	Sorghum	nucleus	51.64	10.68
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	22.95	10.65
TraesCS4D01G224600.1	Wheat	nucleus	48.36	10.59
TraesCS2A01G409400.1	Wheat	nucleus	49.18	10.56
OQU81560	Sorghum	nucleus	50.82	10.53
TraesCS2D01G575600.3	Wheat	nucleus, plastid	50.82	10.53
TraesCS5A01G558500.1	Wheat	nucleus	49.18	10.26
OQU82120	Sorghum	nucleus	49.18	10.2
GSMUA_Achr11P...	Banana	nucleus	39.34	10.19
Zm00001d026147_P002	Maize	nucleus	50.82	10.06
Os10t0104300-00	Rice	nucleus	23.77	8.87
GSMUA_Achr8P11430_001	Banana	nucleus	38.52	8.61
GSMUA_Achr11P...	Banana	nucleus	38.52	8.51
GSMUA_Achr5P20600_001	Banana	nucleus	40.16	8.33
Os12t0632600-00	Rice	nucleus	23.77	8.24
Os01t0705700-01	Rice	nucleus	28.69	7.61
GSMUA_Achr11P...	Banana	nucleus	36.89	7.59
Os03t0725800-01	Rice	nucleus	22.13	7.52
KRH41187	Soybean	nucleus	37.7	7.3
Bra027653.1-P	Field mustard	nucleus	33.61	6.88
VIT_02s0025g03450.t01	Wine grape	nucleus	35.25	6.85
Bra025508.1-P	Field mustard	nucleus	35.25	6.84
Os03t0671800-01	Rice	nucleus	21.31	6.75
KRH59908	Soybean	nucleus	34.43	6.66
Bra027796.1-P	Field mustard	nucleus	32.79	6.6
Solyc08g081140.2.1	Tomato	nucleus	33.61	6.55
AT1G63650.1	Thale cress	nucleus	31.97	6.54
AT5G41315.2	Thale cress	nucleus	33.61	6.36
AT4G00480.2	Thale cress	nucleus	27.87	5.86
VIT_15s0046g02560.t01	Wine grape	nucleus	30.33	5.61
KRH65046	Soybean	nucleus	29.51	5.56
KRH48144	Soybean	nucleus	28.69	5.38
Bra000970.1-P	Field mustard	nucleus	27.87	5.2
Bra037343.1-P	Field mustard	cytosol	28.69	4.92
Os01t0235700-01	Rice	nucleus	23.77	4.7
Os10t0575000-01	Rice	nucleus	24.59	4.29
Os03t0671000-00	Rice	mitochondrion	4.92	2.36
Os04t0557500-00	Rice	mitochondrion, plasma membrane	0.82	0.56
Os07t0211500-00	Rice	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Os01t0577300-00	EnsemblPlantsGene:Os01g0577300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF94	PFAM:PF00010	PFscan:PS50888	ProteinID:BAS72834.1	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00039397C0	UniProt:A0A0P0V4D3	MapMan:15.5.32	:

Description

TRANSCRIPTIONAL ACTIVATOR BSimilar to Rb (Fragment). (Os01t0577300-00)

Coordinates

chr1:+:22325472..22325974

Molecular Weight (calculated)

13734.6 Da

IEP (calculated)

8.753

GRAVY (calculated)

-0.589

Length

122 amino acids

Sequence
(BLAST)

001: MSERRRREKL NEMFLILKSL VPSIDKVDKA SILSETIAYL KELERRVQEL ESGKKVSRPA KRKPCSETII GGGGGGGGAG AVKEHHHWVL SESQEGTPSD
101: VRVIVMDKDE LHLEVQCRWK EL

Best Arabidopsis Sequence Match ( AT5G41315.2 )
(BLAST)

001: MGYRDEETMA TGQNRTTVPE NLKKHLAVSV RNIQWSYGIF WSVSASQSGV LEWGDGYYNG DIKTRKTIQA SEIKADQLGL RRSEQLSELY ESLSVAESSS
101: SGVAAGSQVT RRASAAALSP EDLADTEWYY LVCMSFVFNI GEGMPGRTFA NGEPIWLCNA HTADSKVFSR SLLAKSAAVK TVVCFPFLGG VVEIGTTEHI
201: TEDMNVIQCV KTSFLEAPDP YATILPARSD YHIDNVLDPQ QILGDEIYAP MFSTEPFPTA SPSRTTNGFD QEHEQVADDH DSFMTERITG GASQVQSWQL
301: MDDELSNCVH QSLNSSDCVS QTFVEGAAGR VAYGARKSRV QRLGQIQEQQ RNVKTLSFDP RNDDVHYQSV ISTIFKTNHQ LILGPQFRNC DKQSSFTRWK
401: KSSSSSSGTA TVTAPSQGML KKIIFDVPRV HQKEKLMLDS PEARDETGNH AVLEKKRREK LNERFMTLRK IIPSINKIDK VSILDDTIEY LQELERRVQE
501: LESCRESTDT ETRGTMTMKR KKPCDAGERT SANCANNETG NGKKVSVNNV GEAEPADTGF TGLTDNLRIG SFGNEVVIEL RCAWREGVLL EIMDVISDLH
601: LDSHSVQSST GDGLLCLTVN CKHKGSKIAT PGMIKEALQR VAWIC

Arabidopsis Description

GL3Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1R7T3F7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.