Factsheet for Os01t0235700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0402800-01
Os07t0615200-01
Os09t0439200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	Os03t0402800-01	AT1G19180.1	21798944
AT1G01260.1	Os07t0615200-01	AT1G19180.1	21798944
AT1G01260.1	Os09t0439200-01	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99993	Sorghum	nucleus	83.31	82.64
Zm00001d039271_P001	Maize	nucleus	81.52	81.66
Zm00001d009013_P001	Maize	nucleus	79.74	80.52
TraesCS4A01G028900.1	Wheat	nucleus	66.77	69.01
TraesCS4B01G276900.1	Wheat	nucleus	66.45	68.56
TraesCS4D01G275500.1	Wheat	nucleus	66.13	68.23
HORVU3Hr1G057280.2	Barley	nucleus	82.5	66.36
GSMUA_Achr10P...	Banana	nucleus	43.92	59.04
GSMUA_Achr7P14640_001	Banana	nucleus	43.44	55.37
GSMUA_Achr1P28110_001	Banana	nucleus	39.55	49.09
GSMUA_Achr8P05350_001	Banana	nucleus	35.82	49.0
GSMUA_Achr8P26280_001	Banana	cytosol	35.98	47.95
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	36.79	47.79
VIT_15s0046g00320.t01	Wine grape	nucleus	45.22	46.19
CDY27319	Canola	nucleus	32.58	45.37
KRH68922	Soybean	nucleus	40.36	45.27
GSMUA_Achr6P35730_001	Banana	nucleus	35.82	45.01
PGSC0003DMT400000652	Potato	nucleus	43.44	44.82
Solyc01g096050.2.1	Tomato	nucleus	43.76	44.63
CDY66312	Canola	nucleus	32.41	43.67
Bra039279.1-P	Field mustard	nucleus	32.25	43.36
PGSC0003DMT400018046	Potato	extracellular, nucleus	40.52	43.25
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	39.87	42.78
CDY56874	Canola	nucleus	33.71	42.36
KRH06456	Soybean	nucleus	42.3	42.23
Bra004532.1-P	Field mustard	nucleus	33.23	42.18
Os01t0705700-01	Rice	nucleus	31.44	42.17
CDX80023	Canola	nucleus	33.23	42.09
Solyc05g050560.1.1	Tomato	nucleus	39.38	41.97
KRH47899	Soybean	nucleus	42.46	41.85
KRG97199	Soybean	nucleus	41.33	41.2
AT1G01260.1	Thale cress	nucleus	39.06	40.85
CDX90021	Canola	nucleus	35.66	40.74
Bra033273.1-P	Field mustard	nucleus	37.44	39.55
AT2G46510.1	Thale cress	nucleus	35.33	38.52
Os09t0519100-00	Rice	nucleus	10.53	24.62
Os10t0575000-01	Rice	nucleus	27.23	24.03
Os01t0577300-00	Rice	cytosol	4.7	23.77
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	10.05	23.57
Os04t0557500-00	Rice	mitochondrion, plasma membrane	6.48	22.22
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	16.69	18.43
Os04t0557800-00	Rice	mitochondrion	17.02	18.29
Os03t0229100-00	Rice	plastid	8.1	17.48
Os12t0632600-00	Rice	nucleus	9.89	17.33
Os03t0725800-01	Rice	nucleus	9.89	16.99
Os01t0576100-00	Rice	nucleus	8.27	16.24
Os03t0671800-01	Rice	nucleus	8.59	13.77
Os11t0258700-00	Rice	mitochondrion	10.21	13.04
Os07t0211500-00	Rice	nucleus	10.05	12.97
Os10t0104300-00	Rice	nucleus	6.65	12.54
Os03t0671000-00	Rice	mitochondrion	2.43	5.91

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4327781	EMBL:AK064943	EMBL:AK121013	ProteinID:BAF04438.1
ProteinID:BAS71223.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	EnsemblPlantsGene:Os01g0235700	EnsemblPlants:Os01t0235700-01
PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF47	UniProt:Q0JP90
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0000DD8A30	RefSeq:XP_015621308.1	InterPro:bHLH_dom	SEG:seg

Description

basic helix-loop-helix protein 008, OsMYC2-like protein 2, MYC2-like protein 2Similar to BHLH transcription factor (Fragment). (Os01t0235700-01);Similar to BHLH transcription factor (Fragment). (Os01t0235700-02)

Coordinates

chr1:-:7495121..7498347

Molecular Weight (calculated)

66986.2 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.532

Length

617 amino acids

Sequence
(BLAST)

001: MVMKMEADED GANGGTGGTW TDEDRALTAS VLGTDAFAYL TKGGGAISEG LVAASLPVDL QNRLQELVES DRPGAGWNYA IFWQLSRTKS GDLVLGWGDG
101: SCREPHDGEM GPAASAGSDE AKQRMRKRVL QRLHSAFGGV DEEDYAPGID QVTDTEMFFL ASMYFAFPRR AGGPGQVFAA GVPLWIPNTE RNVFPANYCY
201: RGYLANAAGF RTIVLVPFET GVLELGSMQQ VAESSDTLQT IRSVFAGAIG NKAGVQRHEG SGPTDKSPGL AKIFGKDLNL GRPSAGPGTG VSEADERSWE
301: QRTGGGSSLL PNVQRGLQNF TWSQARGLNS HQQKFGNGIL IVSNEATPRN NGGVDSSTAT QFQLQKAPPL QKLPQLQKSH QLVKPQQLVS QQQLQPQAPR
401: QIDFSAGTSS KPGVLTKKPA GIDGDGAEVD GLCKDEGPPP ALEDRRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD
501: AITYITDLQK KLKEMEVERE RLIESGMIDP RDRTPRPEVD IQVVQDEVLV RVMSPMESHP VRAIFQAFEE AEVHAGESKI TSNNGTAVHS FIIKCPGAEQ
601: QTREKVIAAM SRVMNSG

Best Arabidopsis Sequence Match ( AT1G01260.3 )
(BLAST)

001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR

Arabidopsis Description

BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.