Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P28110_001 | Banana | nucleus | 66.8 | 66.0 |
| GSMUA_Achr8P05350_001 | Banana | nucleus | 47.66 | 51.88 |
| GSMUA_Achr8P26280_001 | Banana | cytosol | 47.66 | 50.54 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 48.88 | 50.53 |
| GSMUA_Achr1P14370_001 | Banana | cytosol, nucleus, plastid | 55.19 | 47.13 |
| GSMUA_Achr10P... | Banana | nucleus | 42.97 | 45.97 |
| CDY27319 | Canola | nucleus | 38.29 | 42.44 |
| CDY66312 | Canola | nucleus | 38.09 | 40.83 |
| Bra039279.1-P | Field mustard | nucleus | 38.09 | 40.74 |
| GSMUA_Achr7P14640_001 | Banana | nucleus | 38.29 | 38.84 |
| Bra004532.1-P | Field mustard | nucleus | 38.29 | 38.68 |
| CDX80023 | Canola | nucleus | 38.29 | 38.6 |
| CDY56874 | Canola | nucleus | 38.49 | 38.49 |
| VIT_15s0046g00320.t01 | Wine grape | nucleus | 47.25 | 38.41 |
| KRH68922 | Soybean | nucleus | 42.97 | 38.36 |
| PGSC0003DMT400000652 | Potato | nucleus | 45.62 | 37.46 |
| Solyc01g096050.2.1 | Tomato | nucleus | 44.6 | 36.2 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 42.57 | 36.16 |
| Zm00001d039271_P001 | Maize | nucleus | 45.21 | 36.04 |
| EER99993 | Sorghum | nucleus | 45.62 | 36.01 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 43.79 | 35.95 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 43.79 | 35.95 |
| Zm00001d009013_P001 | Maize | nucleus | 44.6 | 35.84 |
| Os01t0235700-01 | Rice | nucleus | 45.01 | 35.82 |
| Solyc05g050560.1.1 | Tomato | nucleus | 42.16 | 35.75 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 43.38 | 35.68 |
| AT1G01260.1 | Thale cress | nucleus | 42.77 | 35.59 |
| KRH06456 | Soybean | nucleus | 44.2 | 35.11 |
| KRH47899 | Soybean | nucleus | 44.6 | 34.98 |
| TraesCS3A01G158600.1 | Wheat | nucleus | 43.79 | 34.9 |
| KRG97199 | Soybean | nucleus | 43.58 | 34.57 |
| TraesCS3B01G185400.1 | Wheat | nucleus | 43.99 | 34.56 |
| AT2G46510.1 | Thale cress | nucleus | 39.51 | 34.28 |
| TraesCS3D01G166300.2 | Wheat | nucleus | 43.58 | 34.24 |
| EES19274 | Sorghum | nucleus | 39.71 | 33.22 |
| Bra033273.1-P | Field mustard | nucleus | 39.51 | 33.22 |
| CDX90021 | Canola | nucleus | 36.46 | 33.15 |
| GSMUA_Achr11P... | Banana | nucleus | 27.29 | 29.91 |
| GSMUA_Achr7P04720_001 | Banana | nucleus | 28.51 | 29.85 |
| GSMUA_Achr1P18910_001 | Banana | nucleus | 23.63 | 29.44 |
| GSMUA_Achr3P00370_001 | Banana | plastid | 26.27 | 29.32 |
| GSMUA_Achr10P... | Banana | nucleus | 23.22 | 28.57 |
| HORVU3Hr1G057280.2 | Barley | nucleus | 44.4 | 28.42 |
| GSMUA_Achr4P16980_001 | Banana | nucleus | 27.7 | 26.82 |
| GSMUA_Achr2P18140_001 | Banana | nucleus | 25.05 | 26.51 |
| GSMUA_Achr8P14720_001 | Banana | nucleus | 30.14 | 25.3 |
| GSMUA_Achr9P20820_001 | Banana | nucleus | 18.94 | 25.27 |
| Zm00001d007536_P001 | Maize | plastid | 30.96 | 25.04 |
| GSMUA_Achr5P18100_001 | Banana | nucleus | 23.83 | 23.93 |
| GSMUA_Achr11P... | Banana | nucleus | 23.22 | 23.7 |
| GSMUA_AchrUn_... | Banana | cytosol | 23.83 | 22.63 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 8.76 | 21.39 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 10.79 | 19.92 |
| GSMUA_Achr1P08130_001 | Banana | mitochondrion | 22.61 | 19.89 |
| GSMUA_Achr11P... | Banana | nucleus | 18.94 | 19.75 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 21.79 | 19.6 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 11.2 | 18.64 |
| GSMUA_Achr11P... | Banana | nucleus | 20.77 | 18.48 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 12.02 | 18.04 |
| GSMUA_Achr3P17620_001 | Banana | nucleus | 19.76 | 17.2 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 11.61 | 17.17 |
| GSMUA_AchrUn_... | Banana | nucleus | 11.0 | 16.77 |
| GSMUA_Achr11P... | Banana | nucleus | 20.16 | 16.69 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 11.0 | 16.17 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 10.59 | 16.05 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 7.54 | 15.81 |
| GSMUA_Achr6P21490_001 | Banana | nucleus | 20.77 | 15.67 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 18.53 | 15.48 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 9.78 | 15.34 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 10.18 | 15.06 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 9.78 | 14.08 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | InterPro:ACT_dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr6G35730_001 | EnsemblPlants:GSMUA_Achr6P35730_001 | EnsemblPlants:GSMUA_Achr6T35730_001 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR002912 | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0TD16 | InterPro:MYC/MYB_N | PFAM:PF00010 |
| PFAM:PF14215 | PFscan:PS50888 | PFscan:PS51671 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF47 | SMART:SM00353 |
| SUPFAM:SSF47459 | SUPFAM:SSF55021 | UniParc:UPI0002962F53 | InterPro:bHLH_dom | SEG:seg | : |
Description
Putative Transcription factor bHLH3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G35730_001]
Coordinates
chr6:+:33856610..33858217
Molecular Weight (calculated)
54753.1 Da
IEP (calculated)
7.087
GRAVY (calculated)
-0.471
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MRWETGMGSR CSEEDRAEAA AVLGGRALDF LLARSHVSSS DHLDAVGEGV PDLQTKLQSL VEGHGSVWAC AVFWQISRSR SGELVLRWGD GHCRELVSGV
101: DDDGTNGRYP QGAGPLHRMR KRVLERLHVL SGGSHEENYA LCRDRLADSE MYFLASMYFL FHPGEGAPGR ALLSENHIWI PETAFPGADY FVRAFLARTA
201: GVRTVVLIPI DAGVLELASF DAVPESPDEL HRIRADLNVA PAQMSMKVPN WNLNHSVEEA TPVHEACLRH GSGVARDEDP VTNQFLAEKQ QQPKPQCSSS
301: KSTGRLGTPA TPEDRKPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFC ALRAVVPNVS KTDKASLLAD AIAYITELQR KLKEMEAEKE MLRQPAFMDH
401: DSHTHRPKLN VELVQDELMV RLSCPSHTHP VSGVIRALNE SHINVVESKV VVSDDTVMHT FVVESQQLTR EKLLAAITRE VNRRKPQCLS L
101: DDDGTNGRYP QGAGPLHRMR KRVLERLHVL SGGSHEENYA LCRDRLADSE MYFLASMYFL FHPGEGAPGR ALLSENHIWI PETAFPGADY FVRAFLARTA
201: GVRTVVLIPI DAGVLELASF DAVPESPDEL HRIRADLNVA PAQMSMKVPN WNLNHSVEEA TPVHEACLRH GSGVARDEDP VTNQFLAEKQ QQPKPQCSSS
301: KSTGRLGTPA TPEDRKPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFC ALRAVVPNVS KTDKASLLAD AIAYITELQR KLKEMEAEKE MLRQPAFMDH
401: DSHTHRPKLN VELVQDELMV RLSCPSHTHP VSGVIRALNE SHINVVESKV VVSDDTVMHT FVVESQQLTR EKLLAAITRE VNRRKPQCLS L
001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ
Arabidopsis Description
BHLH3Transcription factor bHLH3 [Source:UniProtKB/Swiss-Prot;Acc:O23487]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.