Factsheet for PGSC0003DMT400018046

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 25270759

msms PMID: 25270759 doi

DD Burra, O Berkowitz, PE Hedley, J Morris, S Resjö, F Levander, E Liljeroth, E Andreasson, E Alexandersson

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007592
PGSC0003DMT400075155

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	PGSC0003DMT400007592	AT1G19180.1	21798944
AT1G01260.1	PGSC0003DMT400075155	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050560.1.1	Tomato	nucleus	94.64	94.47
PGSC0003DMT400000652	Potato	nucleus	73.7	71.24
VIT_15s0046g00320.t01	Wine grape	nucleus	68.17	65.23
KRH68922	Soybean	nucleus	54.5	57.27
KRH06456	Soybean	nucleus	58.13	54.37
GSMUA_Achr10P...	Banana	nucleus	42.91	54.03
KRG97199	Soybean	nucleus	57.79	53.96
AT1G01260.1	Thale cress	nucleus	54.33	53.22
KRH47899	Soybean	nucleus	57.61	53.19
CDY27319	Canola	nucleus	40.66	53.05
CDY66312	Canola	nucleus	41.0	51.75
Bra039279.1-P	Field mustard	nucleus	41.0	51.63
CDX90021	Canola	nucleus	47.75	51.11
GSMUA_Achr8P05350_001	Banana	nucleus	39.45	50.55
Bra033273.1-P	Field mustard	nucleus	50.35	49.83
CDX80023	Canola	nucleus	41.0	48.67
CDY56874	Canola	nucleus	41.18	48.47
Bra004532.1-P	Field mustard	nucleus	40.66	48.35
GSMUA_Achr8P26280_001	Banana	cytosol	38.06	47.52
AT2G46510.1	Thale cress	nucleus	46.19	47.17
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	37.89	46.11
GSMUA_Achr1P28110_001	Banana	nucleus	39.1	45.47
GSMUA_Achr7P14640_001	Banana	nucleus	37.2	44.42
GSMUA_Achr6P35730_001	Banana	nucleus	36.16	42.57
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	41.52	41.74
Zm00001d009013_P001	Maize	nucleus	44.12	41.73
Zm00001d039271_P001	Maize	nucleus	44.46	41.72
EER99993	Sorghum	nucleus	44.46	41.32
TraesCS4A01G028900.1	Wheat	nucleus	42.56	41.21
TraesCS4B01G276900.1	Wheat	nucleus	42.39	40.97
TraesCS3A01G158600.1	Wheat	nucleus	43.6	40.91
TraesCS4D01G275500.1	Wheat	nucleus	42.21	40.8
Os01t0235700-01	Rice	nucleus	43.25	40.52
TraesCS3B01G185400.1	Wheat	nucleus	43.77	40.48
TraesCS3D01G166300.2	Wheat	nucleus	43.6	40.32
PGSC0003DMT400051672	Potato	nucleus	32.53	39.41
EES19274	Sorghum	nucleus	39.1	38.5
HORVU3Hr1G057280.2	Barley	nucleus	44.12	33.25
PGSC0003DMT400014089	Potato	nucleus	20.24	30.47
Zm00001d007536_P001	Maize	plastid	31.66	30.15
PGSC0003DMT400028057	Potato	nucleus	20.24	30.08
PGSC0003DMT400014097	Potato	nucleus	23.36	29.54
PGSC0003DMT400028054	Potato	cytosol	10.03	29.44
PGSC0003DMT400028052	Potato	nucleus	10.03	28.57
PGSC0003DMT400002963	Potato	nucleus	29.41	28.43
PGSC0003DMT400047220	Potato	nucleus	22.15	28.32
PGSC0003DMT400031899	Potato	plastid	19.9	26.68
PGSC0003DMT400015017	Potato	nucleus	20.42	25.88
PGSC0003DMT400045204	Potato	nucleus	30.28	25.22
PGSC0003DMT400078698	Potato	nucleus	6.57	18.18
PGSC0003DMT400033757	Potato	nucleus	6.4	17.62
PGSC0003DMT400013074	Potato	nucleus	10.03	16.43
PGSC0003DMT400078699	Potato	nucleus	9.0	16.1
PGSC0003DMT400033569	Potato	nucleus	15.57	15.25
PGSC0003DMT400032140	Potato	nucleus	9.0	14.44
PGSC0003DMT400078696	Potato	nucleus	8.13	13.54

Protein Annotations

EntrezGene:102601015	MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1A9Y4
InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	EnsemblPlantsGene:PGSC0003DMG400007010	PGSC:PGSC0003DMG400007010	EnsemblPlants:PGSC0003DMT400018046
PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF47	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295134C
RefSeq:XP_006345551.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

Myc2 bHLH protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007010]

Coordinates

chr5:-:44972458..44975071

Molecular Weight (calculated)

64289.5 Da

IEP (calculated)

7.798

GRAVY (calculated)

-0.434

Length

578 amino acids

Sequence
(BLAST)

001: MTMLWSDEDK TMVAAVLGTK AFDYLMSSLV SAECSLMAMG SDENLQNKLS DLVERPNASN FSWNYAIFWQ ISRSKLGELV LGWGDGCCRE AREGEESELT
101: RILNLRLADE AQQRMRKRVL QKLHMFFGGT DEDNYVFGLD KVTDTEMFFL ASMYFSFPRG QGGPGKCFSA GKHVWLSDIM RSSVDYCSRS FLMKSAGMQT
201: VVLIPTDIGV VELGSVRTIP ESLELVHSIK SCFSSFLAQV RAKQAASVAD VAEKKNGSNS MFPSSFPFEQ SKGNPKIFGQ NLKSGSTEFR EKLAVRKPVD
301: RPLEMYRNGN RAPIINTQNG VRPVAWASFG NVKPGNSVEL YSPQAPPNNL REFVNGGREE LRLNSLQHQK PGRMQIDFTH SRPVVSPVPT VESEHSDVEV
401: SCKENHAGPA DERRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AHITDMQKRI RDTENELERL GSTSVDAADI
501: NIEAASDEVI VRASCPLGTH PVAKIVEAFK ETQVSVLESK LAVGNDTVYH TFVVKSSGSE QLTKEKLMAA FSGESNSL

Best Arabidopsis Sequence Match ( AT1G01260.3 )
(BLAST)

001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR

Arabidopsis Description

BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.