Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01260.1 | EER92157 | AT1G19180.1 | 21798944 |
| AT1G01260.1 | EER97533 | AT1G19180.1 | 21798944 |
| AT1G01260.1 | EER98969 | AT1G19180.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039271_P001 | Maize | nucleus | 94.37 | 95.29 |
| Zm00001d009013_P001 | Maize | nucleus | 91.0 | 92.64 |
| Os01t0235700-01 | Rice | nucleus | 82.64 | 83.31 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 66.88 | 69.68 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 66.72 | 69.4 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 66.56 | 69.23 |
| EES19274 | Sorghum | nucleus | 59.16 | 62.69 |
| GSMUA_Achr10P... | Banana | nucleus | 44.37 | 60.13 |
| GSMUA_Achr7P14640_001 | Banana | nucleus | 43.89 | 56.41 |
| GSMUA_Achr8P05350_001 | Banana | nucleus | 37.14 | 51.22 |
| GSMUA_Achr1P28110_001 | Banana | nucleus | 39.71 | 49.7 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 37.3 | 48.84 |
| GSMUA_Achr8P26280_001 | Banana | cytosol | 36.33 | 48.81 |
| VIT_15s0046g00320.t01 | Wine grape | nucleus | 45.5 | 46.85 |
| CDY27319 | Canola | nucleus | 33.28 | 46.73 |
| KRH68922 | Soybean | nucleus | 40.84 | 46.18 |
| PGSC0003DMT400000652 | Potato | nucleus | 44.21 | 45.99 |
| GSMUA_Achr6P35730_001 | Banana | nucleus | 36.01 | 45.62 |
| CDY66312 | Canola | nucleus | 33.28 | 45.2 |
| Solyc01g096050.2.1 | Tomato | nucleus | 43.89 | 45.12 |
| Bra039279.1-P | Field mustard | nucleus | 33.12 | 44.88 |
| KRH47899 | Soybean | nucleus | 44.86 | 44.57 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 41.32 | 44.46 |
| EES01345 | Sorghum | nucleus | 34.57 | 44.42 |
| KRH06456 | Soybean | nucleus | 43.57 | 43.85 |
| GSMUA_Achr1P14370_001 | Banana | cytosol, nucleus, plastid | 40.35 | 43.65 |
| Solyc05g050560.1.1 | Tomato | nucleus | 40.51 | 43.52 |
| Bra004532.1-P | Field mustard | nucleus | 33.12 | 42.39 |
| CDX80023 | Canola | nucleus | 33.12 | 42.3 |
| KRG97199 | Soybean | nucleus | 41.8 | 42.0 |
| CDY56874 | Canola | nucleus | 33.12 | 41.96 |
| CDX90021 | Canola | nucleus | 35.85 | 41.3 |
| AT1G01260.1 | Thale cress | nucleus | 38.59 | 40.68 |
| Bra033273.1-P | Field mustard | nucleus | 37.62 | 40.07 |
| AT2G46510.1 | Thale cress | nucleus | 35.37 | 38.87 |
| EER97058 | Sorghum | cytosol, nucleus, plastid | 11.9 | 26.81 |
| EER99201 | Sorghum | nucleus | 12.54 | 26.35 |
| KXG25462 | Sorghum | nucleus | 11.74 | 26.26 |
| KXG39194 | Sorghum | nucleus | 28.14 | 24.75 |
| OQU80778 | Sorghum | nucleus | 10.29 | 23.7 |
| OQU80776 | Sorghum | nucleus | 9.97 | 23.57 |
| OQU75588 | Sorghum | nucleus | 9.97 | 23.57 |
| OQU86344 | Sorghum | nucleus | 9.32 | 22.66 |
| OQU80775 | Sorghum | cytosol, nucleus, peroxisome, plastid | 9.97 | 22.22 |
| OQU80777 | Sorghum | nucleus | 9.32 | 20.71 |
| OQU82117 | Sorghum | nucleus | 18.01 | 18.98 |
| OQU81560 | Sorghum | nucleus | 17.36 | 18.34 |
| OQU82120 | Sorghum | nucleus | 16.88 | 17.86 |
| EES10849 | Sorghum | nucleus | 9.65 | 17.39 |
| KXG37671 | Sorghum | nucleus | 9.81 | 17.13 |
| KXG39824 | Sorghum | nucleus | 8.84 | 16.87 |
| EER93685 | Sorghum | mitochondrion | 9.97 | 16.67 |
| KXG37866 | Sorghum | nucleus | 9.81 | 16.44 |
| OQU88697 | Sorghum | nucleus | 17.2 | 15.8 |
| EER93684 | Sorghum | nucleus | 9.65 | 15.58 |
| OQU92032 | Sorghum | nucleus | 8.04 | 14.71 |
| OQU92034 | Sorghum | nucleus | 7.4 | 14.51 |
| KXG24110 | Sorghum | nucleus | 9.16 | 14.32 |
| OQU82119 | Sorghum | nucleus | 12.54 | 14.29 |
| OQU77369 | Sorghum | nucleus | 8.52 | 12.62 |
| OQU75589 | Sorghum | nucleus | 7.72 | 12.47 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:8078088 | UniProt:C5XJK2 | ncoils:Coil | EnsemblPlants:EER99993 |
| ProteinID:EER99993 | ProteinID:EER99993.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 |
| PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF47 | SMART:SM00353 | EnsemblPlantsGene:SORBI_3003G004500 | SUPFAM:SSF47459 |
| UniParc:UPI0001A84950 | RefSeq:XP_002454874.1 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr3:+:429259..432822
Molecular Weight (calculated)
67725.5 Da
IEP (calculated)
7.610
GRAVY (calculated)
-0.466
Length
622 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMKMELEDD GAMGGRGTGG MWTEEDRALG AAVLGADAFA YLTKGGGAIS EGLVAASLPD DLQNKLQELV ESESPGTGWN YAIFWQLSRT KSGDLVLGWG
101: DGSCREPRDG EVGAAASAGS DDTKQRMRKR VLQRLHIAFG VADEEDYAPG IDQVTDTEMF FLASMYFAFP RRTGGPGQAF AAGIPLWVPN SERKVFPANY
201: CYRGFLANAA GFRTIVLVPF ESGVLELGSM QHIAESSDTI QSIRSVFAGT SGNKTAVQRH EGNGPAPPER SPSLAKIFGK DLNLGRPSVG PAVGVSKVDE
301: RTWEQRSAAG GTSLLPNVQK GLQNFTWSQA RGLNSHQQKF GNGVLIVSNE AAHRNNGAVD SPSAAQFQLQ KAPQLQKLQL QKLPVVQKTP QLVNQQPMQP
401: QVPRQIDFSA GSSSKPGVLV TRAAAVLDGE SAEVDGLCKE EGPPPVIEDR RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA
501: SLLGDAITYI TDLQKKLKEM ESERERLLES GMVDPRERAP RPEVDIQVVQ DEVLVRVMSP MDNHPVRKVF QAFEEAEVRV GESKVTGNNN GTVVHSFIIK
601: CPGAEQQTRE KVIAAMSRAM SS
101: DGSCREPRDG EVGAAASAGS DDTKQRMRKR VLQRLHIAFG VADEEDYAPG IDQVTDTEMF FLASMYFAFP RRTGGPGQAF AAGIPLWVPN SERKVFPANY
201: CYRGFLANAA GFRTIVLVPF ESGVLELGSM QHIAESSDTI QSIRSVFAGT SGNKTAVQRH EGNGPAPPER SPSLAKIFGK DLNLGRPSVG PAVGVSKVDE
301: RTWEQRSAAG GTSLLPNVQK GLQNFTWSQA RGLNSHQQKF GNGVLIVSNE AAHRNNGAVD SPSAAQFQLQ KAPQLQKLQL QKLPVVQKTP QLVNQQPMQP
401: QVPRQIDFSA GSSSKPGVLV TRAAAVLDGE SAEVDGLCKE EGPPPVIEDR RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA
501: SLLGDAITYI TDLQKKLKEM ESERERLLES GMVDPRERAP RPEVDIQVVQ DEVLVRVMSP MDNHPVRKVF QAFEEAEVRV GESKVTGNNN GTVVHSFIIK
601: CPGAEQQTRE KVIAAMSRAM SS
001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
Arabidopsis Description
BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.