Factsheet for PGSC0003DMT400000652

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007592
PGSC0003DMT400075155

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	PGSC0003DMT400007592	AT1G19180.1	21798944
AT1G01260.1	PGSC0003DMT400075155	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096050.2.1	Tomato	nucleus	95.65	94.55
PGSC0003DMT400018046	Potato	extracellular, nucleus	71.24	73.7
VIT_15s0046g00320.t01	Wine grape	nucleus	70.74	70.03
KRH68922	Soybean	nucleus	56.19	61.09
KRH47899	Soybean	nucleus	61.04	58.31
KRH06456	Soybean	nucleus	59.03	57.12
GSMUA_Achr10P...	Banana	nucleus	43.65	56.86
KRG97199	Soybean	nucleus	58.7	56.7
CDY27319	Canola	nucleus	40.47	54.63
GSMUA_Achr8P05350_001	Banana	nucleus	40.64	53.88
AT1G01260.1	Thale cress	nucleus	52.84	53.56
CDX90021	Canola	nucleus	47.99	53.15
CDY66312	Canola	nucleus	40.64	53.06
Bra039279.1-P	Field mustard	nucleus	40.47	52.72
Bra033273.1-P	Field mustard	nucleus	50.67	51.88
CDX80023	Canola	nucleus	41.97	51.54
Bra004532.1-P	Field mustard	nucleus	41.47	51.03
AT2G46510.1	Thale cress	nucleus	47.99	50.71
CDY56874	Canola	nucleus	41.3	50.31
GSMUA_Achr8P26280_001	Banana	cytosol	38.63	49.89
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	39.13	49.26
GSMUA_Achr1P28110_001	Banana	nucleus	40.47	48.69
GSMUA_Achr7P14640_001	Banana	nucleus	39.13	48.35
GSMUA_Achr6P35730_001	Banana	nucleus	37.46	45.62
TraesCS4A01G028900.1	Wheat	nucleus	45.48	45.56
TraesCS4B01G276900.1	Wheat	nucleus	45.15	45.15
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	43.31	45.04
TraesCS4D01G275500.1	Wheat	nucleus	44.98	44.98
Zm00001d039271_P001	Maize	nucleus	46.15	44.81
EER99993	Sorghum	nucleus	45.99	44.21
Zm00001d009013_P001	Maize	nucleus	45.15	44.19
TraesCS3A01G158600.1	Wheat	nucleus	44.98	43.67
Os01t0235700-01	Rice	nucleus	44.82	43.44
TraesCS3B01G185400.1	Wheat	nucleus	45.15	43.2
TraesCS3D01G166300.2	Wheat	nucleus	44.98	43.04
EES19274	Sorghum	nucleus	41.64	42.42
PGSC0003DMT400051672	Potato	nucleus	32.94	41.3
HORVU3Hr1G057280.2	Barley	nucleus	45.48	35.46
PGSC0003DMT400014089	Potato	nucleus	20.74	32.29
Zm00001d007536_P001	Maize	plastid	32.61	32.13
PGSC0003DMT400028057	Potato	nucleus	20.74	31.88
PGSC0003DMT400014097	Potato	nucleus	24.25	31.73
PGSC0003DMT400028054	Potato	cytosol	10.03	30.46
PGSC0003DMT400002963	Potato	nucleus	29.6	29.6
PGSC0003DMT400028052	Potato	nucleus	10.03	29.56
PGSC0003DMT400047220	Potato	nucleus	22.24	29.42
PGSC0003DMT400031899	Potato	plastid	19.9	27.61
PGSC0003DMT400015017	Potato	nucleus	20.57	26.97
PGSC0003DMT400045204	Potato	nucleus	30.94	26.66
PGSC0003DMT400078698	Potato	nucleus	6.69	19.14
PGSC0003DMT400033757	Potato	nucleus	6.52	18.57
PGSC0003DMT400033569	Potato	nucleus	16.39	16.61
PGSC0003DMT400013074	Potato	nucleus	9.53	16.15
PGSC0003DMT400078699	Potato	nucleus	8.36	15.48
PGSC0003DMT400032140	Potato	nucleus	8.86	14.72
PGSC0003DMT400078696	Potato	nucleus	7.69	13.26

Protein Annotations

EntrezGene:102585423	MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M0ZH36
InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	EnsemblPlantsGene:PGSC0003DMG400000232	PGSC:PGSC0003DMG400000232	EnsemblPlants:PGSC0003DMT400000652
PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF47	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000296731C
RefSeq:XP_006339721.1	InterPro:bHLH_dom	:	:	:	:

Description

Myc2 bHLH protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000232]

Coordinates

chr1:-:73567889..73570559

Molecular Weight (calculated)

66373.6 Da

IEP (calculated)

7.287

GRAVY (calculated)

-0.535

Length

598 amino acids

Sequence
(BLAST)

001: MVTGNMLWSG EDKATVAAVL GKEAFEYLMS GSVSAECSLM AIGNDQNLQN KLSDLVECPN AANFSWNYAI FWQISRSKSG ELVLGWGDGC CREPKEGEER
101: EVKRIFNLRL DDEGQQRMRK RVLQKLHMLF GGTDEDNYAF GLDRVTDTEM FFLASMYFSF PRGEGGPGKC FGSGKHLWLS DALTSNLEYC ARSFLAKSAG
201: MQTIVLIPTD VGVVELGSVR SIPESLELLQ NIKSCFSSFL SLVRDKQAAG IAVVPEKKEG NNPRLSNSGA VTERTDGNPK LFGHDLNSGT HFREKLAVRK
301: AEERPWENGN RMPFVNARNG LNPASWAQFS NVKPGKPVEL YGPPTPGHNL INGGREEFRL NNFQHQKPAA RMQIDFTGAT SRPIVSPAHT VESEHSDVEV
401: SCKEDRGGPV DEKRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYITELQKKL RDMESERENT SRDAIASEDS
501: PSSEIQIRGP NINIEAANDE VIVRVSCSME THPLSRVIQI FKEAQINVVE SKLSAGNGTV YHTFVLKSSG SEQLTKEKLL AAFSSESNSL RQLSPVGQ

Best Arabidopsis Sequence Match ( AT1G01260.3 )
(BLAST)

001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR

Arabidopsis Description

BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.