Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01260.1 | CDY26697 | AT1G19180.1 | 21798944 |
| AT1G01260.1 | CDY41023 | AT1G19180.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70012 | Canola | nucleus | 48.7 | 98.5 |
| CDY70013 | Canola | nucleus | 45.19 | 96.83 |
| Bra033273.1-P | Field mustard | nucleus | 99.44 | 91.95 |
| AT1G01260.1 | Thale cress | nucleus | 78.33 | 71.69 |
| VIT_15s0046g00320.t01 | Wine grape | nucleus | 56.48 | 50.5 |
| CDY27319 | Canola | nucleus | 39.63 | 48.31 |
| Solyc01g096050.2.1 | Tomato | nucleus | 54.07 | 48.26 |
| PGSC0003DMT400000652 | Potato | nucleus | 53.15 | 47.99 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 51.11 | 47.75 |
| KRH68922 | Soybean | nucleus | 48.52 | 47.64 |
| Solyc05g050560.1.1 | Tomato | nucleus | 50.19 | 46.8 |
| CDY66312 | Canola | nucleus | 39.44 | 46.51 |
| CDX80023 | Canola | nucleus | 41.3 | 45.79 |
| GSMUA_Achr10P... | Banana | nucleus | 38.52 | 45.32 |
| CDY56874 | Canola | nucleus | 41.11 | 45.21 |
| KRG97199 | Soybean | nucleus | 51.3 | 44.75 |
| KRH06456 | Soybean | nucleus | 51.11 | 44.66 |
| KRH47899 | Soybean | nucleus | 51.3 | 44.25 |
| GSMUA_Achr8P05350_001 | Banana | nucleus | 36.48 | 43.68 |
| GSMUA_Achr8P26280_001 | Banana | cytosol | 35.93 | 41.9 |
| GSMUA_Achr1P28110_001 | Banana | nucleus | 37.78 | 41.05 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 35.93 | 40.84 |
| GSMUA_Achr1P14370_001 | Banana | cytosol, nucleus, plastid | 40.0 | 37.57 |
| GSMUA_Achr7P14640_001 | Banana | nucleus | 33.52 | 37.4 |
| CDY32242 | Canola | nucleus | 30.93 | 37.03 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 40.93 | 36.96 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 40.74 | 36.85 |
| CDY34468 | Canola | nucleus | 30.74 | 36.81 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 40.74 | 36.79 |
| CDX77696 | Canola | nucleus | 8.15 | 36.67 |
| GSMUA_Achr6P35730_001 | Banana | nucleus | 33.15 | 36.46 |
| EER99993 | Sorghum | nucleus | 41.3 | 35.85 |
| CDX90525 | Canola | nucleus | 30.19 | 35.75 |
| Os01t0235700-01 | Rice | nucleus | 40.74 | 35.66 |
| TraesCS3A01G158600.1 | Wheat | nucleus | 40.56 | 35.55 |
| Zm00001d039271_P001 | Maize | nucleus | 40.19 | 35.23 |
| TraesCS3B01G185400.1 | Wheat | nucleus | 40.74 | 35.2 |
| Zm00001d009013_P001 | Maize | nucleus | 39.81 | 35.19 |
| TraesCS3D01G166300.2 | Wheat | nucleus | 40.56 | 35.04 |
| EES19274 | Sorghum | nucleus | 37.59 | 34.58 |
| CDY58502 | Canola | nucleus | 27.78 | 33.41 |
| CDX77688 | Canola | nucleus | 27.59 | 32.96 |
| CDY09695 | Canola | nucleus | 28.33 | 31.42 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 10.56 | 30.0 |
| HORVU3Hr1G057280.2 | Barley | nucleus | 41.11 | 28.94 |
| CDY03195 | Canola | nucleus | 29.07 | 28.81 |
| CDY03185 | Canola | nucleus | 25.0 | 28.54 |
| CDY35179 | Canola | nucleus | 28.89 | 27.76 |
| CDY26910 | Canola | nucleus | 22.41 | 27.31 |
| CDX73261 | Canola | nucleus | 22.41 | 27.31 |
| CDY59973 | Canola | nucleus | 25.74 | 27.31 |
| CDY35183 | Canola | nucleus | 25.56 | 27.22 |
| CDY03183 | Canola | nucleus | 25.56 | 27.11 |
| CDX78808 | Canola | nucleus | 28.52 | 26.6 |
| CDY33482 | Canola | nucleus | 13.33 | 26.57 |
| CDY44507 | Canola | nucleus | 28.52 | 26.28 |
| CDX77699 | Canola | nucleus | 13.15 | 26.2 |
| CDX84081 | Canola | nucleus | 25.37 | 25.9 |
| Zm00001d007536_P001 | Maize | plastid | 28.52 | 25.37 |
| CDX77694 | Canola | nucleus | 11.85 | 25.3 |
| CDY13737 | Canola | nucleus | 11.11 | 20.34 |
| CDX89627 | Canola | nucleus | 10.0 | 20.22 |
| CDX76899 | Canola | nucleus | 12.04 | 20.12 |
| CDX93135 | Canola | nucleus | 9.81 | 19.85 |
| CDX99505 | Canola | nucleus | 18.89 | 19.58 |
| CDX86891 | Canola | nucleus | 18.89 | 19.58 |
| CDY25628 | Canola | nucleus | 11.67 | 19.57 |
| CDX89511 | Canola | nucleus | 11.48 | 19.31 |
| CDY25513 | Canola | nucleus | 20.19 | 18.89 |
| CDY72199 | Canola | nucleus | 11.67 | 18.86 |
| CDY49678 | Canola | nucleus | 11.67 | 18.86 |
| CDY39747 | Canola | nucleus | 19.44 | 18.78 |
| CDY58950 | Canola | nucleus | 19.81 | 18.54 |
| CDY34367 | Canola | nucleus | 20.19 | 18.29 |
| CDX75679 | Canola | nucleus | 11.3 | 18.15 |
| CDX69336 | Canola | nucleus | 11.11 | 17.75 |
| CDY08314 | Canola | nucleus | 19.81 | 17.69 |
| CDY72121 | Canola | nucleus | 9.07 | 15.91 |
| CDX91907 | Canola | nucleus | 15.93 | 15.81 |
| CDY07214 | Canola | mitochondrion, nucleus | 15.74 | 15.68 |
| CDY51155 | Canola | mitochondrion, nucleus | 15.74 | 15.68 |
| CDY70506 | Canola | nucleus | 15.0 | 15.17 |
| CDY25629 | Canola | nucleus | 7.96 | 14.33 |
| CDX89512 | Canola | nucleus | 7.78 | 14.19 |
| CDY13735 | Canola | nucleus | 7.59 | 14.19 |
| CDY52591 | Canola | nucleus | 7.96 | 13.65 |
| CDX89513 | Canola | nucleus | 8.15 | 13.54 |
| CDY52593 | Canola | nucleus | 7.04 | 13.33 |
| CDY25630 | Canola | nucleus | 7.96 | 13.23 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078DLB4 | EnsemblPlants:CDX90021 | ProteinID:CDX90021 | ProteinID:CDX90021.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0010629 | GO:GO:0044212 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00150520001 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF47 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF2B97 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA10g00610DTranscription factor bHLH13 [Source:Projected from Arabidopsis thaliana (AT1G01260) UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
Coordinates
chrLK031861:+:1295923..1298336
Molecular Weight (calculated)
59464.9 Da
IEP (calculated)
6.577
GRAVY (calculated)
-0.531
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVGSDDNLQ NKLSDLVETP NSSNFSWNYA IFWQVSRSKS GDLVLCWGDG SCREPKDGER SEMMRMLSMG REEETHQTLR KRVLQKLHAL FGGLDDEEDS
101: CALVLDRVTD TEMFLLASMY FSFPRGQGGP GKCFHSSQPV WLSDLVNSGS DYCVRSFLAK SAGIQTVVLV PTDIGVVELG STSCLPHSDE SLSSIRLSFS
201: SPPPPPPPPP PVRLPVVVAN HNDDNSSSKI FGKDLHSSSG FLHQQQHRQF REKLTVRKMD DNRVPKRLDG NNNRFMFSNP ITTMTTSTWI PPEAPTREDF
301: KFLPLQQTSS SSHRLLPPAQ MQIDFSGASS RPSDNNSDGG GGGGGGGADW SDLVGGVDES GGDNRPRKRG RRPANGRAEA LNHVEAERQR REKLNQRFYA
401: LRSVVPNISK MDKASLLGDA VSYINELYAK LKVMEAEREK LGYSSNPLIC LEPPAVNVQT AGEDVAVTVN CSLDSHPASR IFHAFEEAKV EVINAKLEVP
501: QDVVLHTFVI KSEEVTKEKL ISALSREQSG SVQSRTSSGR
101: CALVLDRVTD TEMFLLASMY FSFPRGQGGP GKCFHSSQPV WLSDLVNSGS DYCVRSFLAK SAGIQTVVLV PTDIGVVELG STSCLPHSDE SLSSIRLSFS
201: SPPPPPPPPP PVRLPVVVAN HNDDNSSSKI FGKDLHSSSG FLHQQQHRQF REKLTVRKMD DNRVPKRLDG NNNRFMFSNP ITTMTTSTWI PPEAPTREDF
301: KFLPLQQTSS SSHRLLPPAQ MQIDFSGASS RPSDNNSDGG GGGGGGGADW SDLVGGVDES GGDNRPRKRG RRPANGRAEA LNHVEAERQR REKLNQRFYA
401: LRSVVPNISK MDKASLLGDA VSYINELYAK LKVMEAEREK LGYSSNPLIC LEPPAVNVQT AGEDVAVTVN CSLDSHPASR IFHAFEEAKV EVINAKLEVP
501: QDVVLHTFVI KSEEVTKEKL ISALSREQSG SVQSRTSSGR
001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
Arabidopsis Description
BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.