Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26697 | Canola | plastid | 92.91 | 93.28 |
| Bra025713.1-P | Field mustard | plastid | 89.37 | 89.37 |
| AT1G19180.1 | Thale cress | cytosol | 68.11 | 68.38 |
| CDX96675 | Canola | plastid | 68.9 | 66.54 |
| CDX83781 | Canola | plastid | 68.11 | 65.53 |
| CDY37269 | Canola | nucleus | 51.18 | 54.17 |
| CDY46022 | Canola | nucleus | 49.21 | 52.08 |
| CDX73127 | Canola | cytosol | 45.67 | 47.35 |
| CDX73289 | Canola | cytosol | 34.65 | 46.81 |
| CDY45408 | Canola | cytosol | 44.88 | 46.53 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 42.91 | 40.67 |
| Solyc07g042170.2.1 | Tomato | cytosol | 33.86 | 39.81 |
| CDX85865 | Canola | cytosol | 35.04 | 39.73 |
| PGSC0003DMT400075155 | Potato | nucleus | 32.68 | 38.6 |
| CDX68156 | Canola | cytosol | 26.38 | 37.02 |
| PGSC0003DMT400007592 | Potato | nucleus | 35.04 | 35.04 |
| Solyc12g009220.1.1 | Tomato | nucleus | 34.25 | 34.52 |
| CDY21679 | Canola | plastid | 70.87 | 33.03 |
| CDX81917 | Canola | plastid | 65.75 | 32.87 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 27.56 | 32.86 |
| EER97533 | Sorghum | plastid | 30.32 | 32.77 |
| HORVU2Hr1G031310.9 | Barley | cytosol, mitochondrion, plastid | 30.71 | 32.64 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 28.35 | 32.58 |
| TraesCS2B01G195600.1 | Wheat | plastid | 29.13 | 32.03 |
| Os07t0615200-01 | Rice | mitochondrion | 30.32 | 31.56 |
| TraesCS2D01G176800.1 | Wheat | plastid | 28.35 | 31.17 |
| Os03t0402800-01 | Rice | plastid | 27.95 | 31.14 |
| Zm00001d022139_P001 | Maize | plastid | 28.35 | 30.9 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 30.32 | 30.68 |
| EER92157 | Sorghum | plastid | 26.77 | 29.82 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 28.74 | 29.55 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 30.71 | 29.43 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 24.02 | 29.19 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 27.56 | 29.05 |
| TraesCS2A01G169300.1 | Wheat | plastid | 26.38 | 29.0 |
| Zm00001d029448_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 25.98 | 28.95 |
| Os09t0439200-01 | Rice | plastid | 26.38 | 28.88 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 26.77 | 28.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.17 | 27.94 |
| GSMUA_Achr11P... | Banana | cytosol | 25.2 | 27.59 |
| EER98969 | Sorghum | cytosol | 23.62 | 27.15 |
| Zm00001d006860_P001 | Maize | plastid | 28.35 | 27.07 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 24.41 | 26.96 |
| GSMUA_Achr10P... | Banana | cytosol | 16.93 | 26.54 |
| TraesCS5B01G211000.1 | Wheat | nucleus | 24.02 | 26.52 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 26.38 | 26.48 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 22.83 | 25.55 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 21.65 | 25.23 |
| CDY71173 | Canola | nucleus | 26.77 | 25.0 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 21.65 | 24.34 |
| CDX96772 | Canola | nucleus | 25.2 | 23.97 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 18.11 | 23.12 |
| CDY09086 | Canola | cytosol | 20.08 | 23.08 |
| CDY03638 | Canola | nucleus | 24.41 | 22.71 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 31.5 | 22.66 |
| CDX72916 | Canola | nucleus | 24.02 | 22.51 |
| CDX92427 | Canola | cytosol | 17.72 | 22.39 |
| CDY71875 | Canola | cytosol | 19.29 | 21.78 |
| HORVU5Hr1G062290.6 | Barley | mitochondrion, plastid | 25.2 | 21.69 |
| TraesCS5A01G212800.1 | Wheat | plastid | 25.2 | 21.62 |
| CDX96409 | Canola | nucleus | 23.23 | 21.53 |
| CDY26248 | Canola | mitochondrion, nucleus | 22.05 | 21.13 |
| CDY48300 | Canola | cytosol, mitochondrion, nucleus, vacuole | 23.62 | 20.69 |
| CDX81823 | Canola | plastid | 26.38 | 20.18 |
Protein Annotations
| EnsemblPlants:CDY41023 | EnsemblPlantsGene:GSBRNA2T00072318001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDY41023 | ProteinID:CDY41023.1 | SEG:seg |
| SMART:SM00979 | UniParc:UPI0004EEB5AA | UniProt:A0A078HW93 | MapMan:11.7.2.1.2 | MapMan:15.5.45 | : |
Description
BnaC05g14810DBnaC05g14810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW93]
Coordinates
chrLK032488:+:74004..75760
Molecular Weight (calculated)
27257.3 Da
IEP (calculated)
10.301
GRAVY (calculated)
-0.474
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSMECSAT RRSSSGKPSF SLTCSRLSQY LKENGSFGDL SLGMSCKPET NGMSRKPTTT MSLFPCEATN VGSMAAAQDV KPKNLFPRQP SFSSSSSSIP
101: KDDVLKMTHA TSSSRSVKPE PQTAPLTIFY GGQVIVFNDF SAEKAKEVMN LANKGTANTF TGFTSTLNNS IAPTPNQVPH LMKAATQDPK QTSSAAMACE
201: LPIARRASLH RFLAKRKDRV TSKAPYQLSD PAKAYSKPQT GNTTTSWLGL AADM
101: KDDVLKMTHA TSSSRSVKPE PQTAPLTIFY GGQVIVFNDF SAEKAKEVMN LANKGTANTF TGFTSTLNNS IAPTPNQVPH LMKAATQDPK QTSSAAMACE
201: LPIARRASLH RFLAKRKDRV TSKAPYQLSD PAKAYSKPQT GNTTTSWLGL AADM
001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
Arabidopsis Description
TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.