CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73261
CDX84081
CDX92171
CDX95810
CDY26910

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17380.1	CDX73261	AT1G32640.1	19309455
AT1G17380.1	CDX84081	AT1G32640.1	19309455
AT1G17380.1	CDY26910	AT1G32640.1	19309455
AT1G17380.1	CDX92171	AT3G17860.1	19309455
AT1G17380.1	CDX95810	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025977.1-P	Field mustard	nucleus	69.43	71.88
CDY48300	Canola	cytosol, mitochondrion, nucleus, vacuole	64.15	58.62
CDX81823	Canola	plastid	63.77	50.9
CDY71875	Canola	cytosol	40.38	47.56
CDX96772	Canola	nucleus	47.17	46.82
AT1G17380.1	Thale cress	nucleus	46.79	45.26
CDX72916	Canola	nucleus	44.15	43.17
CDY03638	Canola	nucleus	39.62	38.46
CDY71173	Canola	nucleus	39.25	38.24
CDX96409	Canola	nucleus	39.25	37.96
CDX85865	Canola	cytosol	21.89	25.89
KRH47640	Soybean	nucleus	20.75	23.71
CDX73127	Canola	cytosol	21.89	23.67
CDY46022	Canola	nucleus	21.13	23.33
CDY16574	Canola	cytoskeleton, cytosol, nucleus	17.36	23.12
PGSC0003DMT400011155	Potato	nucleus	17.36	23.0
CDY37269	Canola	nucleus	20.75	22.92
CDX73289	Canola	cytosol	16.23	22.87
CDX68156	Canola	cytosol	15.47	22.65
KRH06217	Soybean	nucleus, plastid	19.62	22.61
CDY26697	Canola	plastid	21.51	22.53
CDY45408	Canola	cytosol	20.75	22.45
CDY41023	Canola	plastid	21.13	22.05
CDX92427	Canola	cytosol	16.6	21.89
CDX96675	Canola	plastid	20.75	20.91
CDX83781	Canola	plastid	20.75	20.83
VIT_09s0002g00890.t01	Wine grape	nucleus, plastid	22.26	20.63
Solyc12g049400.1.1	Tomato	cytosol	15.47	20.5
PGSC0003DMT400058918	Potato	nucleus	23.02	19.74
Solyc03g122190.2.1	Tomato	nucleus	23.02	19.74
CDY09086	Canola	cytosol	15.09	18.1
CDX81917	Canola	plastid	21.13	11.02
CDY21679	Canola	plastid	20.75	10.09

Protein Annotations

EnsemblPlants:CDY26248	EnsemblPlantsGene:GSBRNA2T00034919001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom	PANTHER:PTHR33077
PANTHER:PTHR33077:SF5	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:CDY26248	ProteinID:CDY26248.1
SMART:SM00979	UniParc:UPI0004EE770A	UniProt:A0A078GNN7	MapMan:11.7.2.1.2	MapMan:15.5.45	:

Description

BnaA06g11690DBnaA06g11690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNN7]

Coordinates

chrLK032186:+:495871..497154

Molecular Weight (calculated)

29722.0 Da

IEP (calculated)

9.706

GRAVY (calculated)

-0.923

Length

265 amino acids

Sequence
(BLAST)

001: MGWRCSKAQP PEKSNFTRRC SLLSRYLKEK GSFGNINLGL IRKPNSDRVL SGNSDPPGKQ HKADSETKTL DVFQRVLKGE PSPGKANEDS NLSSQLTIFF
101: GGHVLVYNEF PTDKAKEILE VAKQAKPVTD INIKTQINVE NNDNKSNMVL PDLNEPTNSV DIINQQNQVV ERIARRASLH RFFAKRKDRA VARAPYQVNQ
201: NVGQHHYPPK PETAHGRSLK SGQSSKAPEE DVAQTMSQPK PEGDKYMSIE TEEEGQCSKD LQLRL

Best Arabidopsis Sequence Match ( AT1G17380.1 )
(BLAST)

001: MSSSNENAKA QAPEKSDFTR RCSLLSRYLK EKGSFGNIDL GLYRKPDSSL ALPGKFDPPG KQNAMHKAGH SKGEPSTSSG GKVKDVADLS ESQPGSSQLT
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL

Arabidopsis Description

TIFY11AProtein TIFY 11A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.