Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G20900.1 | CDX73261 | AT1G32640.1 | 19309455 |
| AT5G20900.1 | CDX84081 | AT1G32640.1 | 19309455 |
| AT5G20900.1 | CDY26910 | AT1G32640.1 | 19309455 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002338.1-P | Field mustard | cytosol | 88.56 | 88.56 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 78.61 | 79.4 |
| AT5G20900.1 | Thale cress | cytosol | 52.74 | 56.68 |
| CDY09086 | Canola | cytosol | 56.22 | 51.13 |
| Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 27.36 | 36.67 |
| KRH12644 | Soybean | nucleus | 34.83 | 34.83 |
| KRH37606 | Soybean | cytosol, nucleus, plastid | 34.83 | 33.98 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 26.87 | 31.21 |
| TraesCS2B01G534800.1 | Wheat | extracellular | 28.86 | 30.85 |
| GSMUA_Achr10P... | Banana | cytosol | 26.87 | 30.51 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 23.38 | 30.32 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 24.38 | 29.88 |
| HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 29.35 | 29.65 |
| TraesCS2A01G506500.1 | Wheat | cytosol | 29.35 | 29.35 |
| Os04t0653000-01 | Rice | cytosol, nucleus, plastid | 31.34 | 29.17 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 26.37 | 28.65 |
| Zm00001d002029_P003 | Maize | nucleus | 30.35 | 28.24 |
| TraesCS2D01G507200.1 | Wheat | nucleus | 28.36 | 27.54 |
| OQU82468 | Sorghum | nucleus | 28.86 | 26.48 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 27.86 | 25.57 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 28.36 | 25.0 |
| Zm00001d021924_P001 | Maize | plastid | 16.92 | 24.82 |
| Zm00001d046270_P001 | Maize | plastid | 16.92 | 24.82 |
| KRH02523 | Soybean | cytosol | 23.88 | 24.37 |
| Zm00001d026477_P002 | Maize | nucleus | 26.87 | 23.48 |
| CDX73289 | Canola | cytosol | 20.9 | 22.34 |
| KRH19420 | Soybean | nucleus | 22.39 | 21.74 |
| CDX68156 | Canola | cytosol | 19.4 | 21.55 |
| CDY46022 | Canola | nucleus | 23.38 | 19.58 |
| CDY37269 | Canola | nucleus | 23.38 | 19.58 |
| CDX85865 | Canola | cytosol | 21.39 | 19.2 |
| CDX73127 | Canola | cytosol | 23.38 | 19.18 |
| Zm00001d013855_P002 | Maize | plastid | 21.39 | 18.78 |
| CDY71875 | Canola | cytosol | 20.9 | 18.67 |
| CDY26697 | Canola | plastid | 23.38 | 18.58 |
| CDY45408 | Canola | cytosol | 22.39 | 18.37 |
| CDY03638 | Canola | nucleus | 24.88 | 18.32 |
| CDY71173 | Canola | nucleus | 24.38 | 18.01 |
| CDY41023 | Canola | plastid | 22.39 | 17.72 |
| CDX83781 | Canola | plastid | 22.89 | 17.42 |
| CDX96675 | Canola | plastid | 22.39 | 17.11 |
| CDY26248 | Canola | mitochondrion, nucleus | 21.89 | 16.6 |
| CDX96772 | Canola | nucleus | 21.89 | 16.48 |
| CDY48300 | Canola | cytosol, mitochondrion, nucleus, vacuole | 22.39 | 15.52 |
| CDX72916 | Canola | nucleus | 19.4 | 14.39 |
| CDX96409 | Canola | nucleus | 18.91 | 13.87 |
| CDX81823 | Canola | plastid | 19.9 | 12.05 |
| CDX81917 | Canola | plastid | 22.89 | 9.06 |
| CDY21679 | Canola | plastid | 22.39 | 8.26 |
Protein Annotations
| EnsemblPlants:CDX92427 | EnsemblPlantsGene:GSBRNA2T00154191001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDX92427 | ProteinID:CDX92427.1 |
| SEG:seg | SMART:SM00979 | UniParc:UPI0004EF2D1D | MapMan:15.5.45 | : | : |
Description
BnaA10g14660D
Coordinates
chrLK031872:-:607836..609305
Molecular Weight (calculated)
20958.6 Da
IEP (calculated)
7.456
GRAVY (calculated)
-0.360
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKVEEEARA SVEGGCGVGG EEIGGNGTVH GSIAGSVAGE GAEKPIHGAG CIEVPSCEPD APTTRPNQLT IFFGGKVRVF DGIPADKIQE IIRIAAAAAK
101: SIETKNSANT SPVASPALNR APSLSSTSNA AASPAAQSFP VHPISFCRSA ADLPIARRHS LQRFLEKRRD RLVSKNPYPA SDKKTDVPRD DASIKDEYPT
201: A
101: SIETKNSANT SPVASPALNR APSLSSTSNA AASPAAQSFP VHPISFCRSA ADLPIARRHS LQRFLEKRRD RLVSKNPYPA SDKKTDVPRD DASIKDEYPT
201: A
001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
Arabidopsis Description
TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.