Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2A01G506500.1 | Wheat | cytosol | 82.45 | 77.11 |
HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 77.66 | 73.37 |
TraesCS2D01G507200.1 | Wheat | nucleus | 78.19 | 71.01 |
Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 55.85 | 60.69 |
Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 43.09 | 54.0 |
OQU82468 | Sorghum | nucleus | 56.38 | 48.4 |
Zm00001d002029_P003 | Maize | nucleus | 54.79 | 47.69 |
Os04t0653000-01 | Rice | cytosol, nucleus, plastid | 52.13 | 45.37 |
Zm00001d026477_P002 | Maize | nucleus | 45.74 | 37.39 |
GSMUA_Achr8P24590_001 | Banana | nucleus | 37.23 | 30.7 |
GSMUA_Achr4P09660_001 | Banana | cytosol | 35.11 | 30.14 |
CDX92427 | Canola | cytosol | 30.85 | 28.86 |
Bra002338.1-P | Field mustard | cytosol | 30.32 | 28.36 |
AT5G20900.1 | Thale cress | cytosol | 28.19 | 28.34 |
KRH12644 | Soybean | nucleus | 29.79 | 27.86 |
KRH37606 | Soybean | cytosol, nucleus, plastid | 30.32 | 27.67 |
CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 29.26 | 27.64 |
Bra020135.1-P | Field mustard | cytosol | 32.45 | 27.6 |
CDY09086 | Canola | cytosol | 31.91 | 27.15 |
TraesCS2B01G195600.1 | Wheat | plastid | 25.0 | 20.35 |
KRH19420 | Soybean | nucleus | 22.34 | 20.29 |
AT3G43440.1 | Thale cress | cytosol | 25.0 | 19.75 |
KRH02523 | Soybean | cytosol | 20.21 | 19.29 |
TraesCS5B01G211000.1 | Wheat | nucleus | 23.4 | 19.13 |
Protein Annotations
EnsemblPlants:TraesCS2B01G534800.1 | EnsemblPlantsGene:TraesCS2B01G534800 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg | SMART:SM00979 |
TMHMM:TMhelix | MapMan:15.5.45 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:730999878..731004692
Molecular Weight (calculated)
19725.0 Da
IEP (calculated)
9.052
GRAVY (calculated)
0.187
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MCAVCANFPI HLCIYVISYY FFIAYSNYLC CLIIRSGMLP MSSPPANPGQ LTIFYGGSVC VYDSVPPEKA QAIMLIAAAA AAASKSNGTA AVKPPAMSAT
101: NAIQAMLTRS LSLQSTSVAN GQPQAVADPG SICKLQADLP IARRHSLQRF LEKRRDRVVS KAPYGAGKPS EGMGASSGME AVAEGKAQ
101: NAIQAMLTRS LSLQSTSVAN GQPQAVADPG SICKLQADLP IARRHSLQRF LEKRRDRVVS KAPYGAGKPS EGMGASSGME AVAEGKAQ
001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
Arabidopsis Description
TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.