Factsheet for Zm00001d033972_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006150_P001
Zm00001d021164_P001
Zm00001d030028_P001
Zm00001d031717_P001
Zm00001d047017_P001
Zm00001d052728_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43440.1	Zm00001d006150_P001	AT1G32640.1	19309455
AT3G43440.1	Zm00001d021164_P001	AT1G32640.1	19309455
AT3G43440.1	Zm00001d030028_P001	AT1G32640.1	19309455
AT3G43440.1	Zm00001d031717_P001	AT1G32640.1	19309455
AT3G43440.1	Zm00001d047017_P001	AT1G32640.1	19309455
AT3G43440.1	Zm00001d052728_P001	AT1G32640.1	19309455
AT5G20900.1	Zm00001d006150_P001	AT1G32640.1	19309455
AT5G20900.1	Zm00001d021164_P001	AT1G32640.1	19309455
AT5G20900.1	Zm00001d030028_P001	AT1G32640.1	19309455
AT5G20900.1	Zm00001d031717_P001	AT1G32640.1	19309455
AT5G20900.1	Zm00001d047017_P001	AT1G32640.1	19309455
AT5G20900.1	Zm00001d052728_P001	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044708_P001	Maize	cytosol, extracellular, plastid	54.91	63.33
TraesCS2B01G534800.1	Wheat	extracellular	60.69	55.85
HORVU2Hr1G112360.1	Barley	cytosol, mitochondrion, nucleus	60.12	52.26
TraesCS2A01G506500.1	Wheat	cytosol	60.69	52.24
Zm00001d026477_P002	Maize	nucleus	68.21	51.3
TraesCS2D01G507200.1	Wheat	nucleus	58.38	48.79
Zm00001d002029_P003	Maize	nucleus	57.8	46.3
Zm00001d046270_P001	Maize	plastid	31.79	40.15
Zm00001d021924_P001	Maize	plastid	31.79	40.15
GSMUA_Achr4P09660_001	Banana	cytosol	42.2	33.33
GSMUA_Achr8P24590_001	Banana	nucleus	41.62	31.58
AT5G20900.1	Thale cress	cytosol	30.06	27.81
KRH12644	Soybean	nucleus	31.79	27.36
KRH37606	Soybean	cytosol, nucleus, plastid	32.37	27.18
CDX92427	Canola	cytosol	31.21	26.87
Bra002338.1-P	Field mustard	cytosol	30.06	25.87
CDY16574	Canola	cytoskeleton, cytosol, nucleus	29.48	25.63
Zm00001d013855_P002	Maize	plastid	31.79	24.02
CDY09086	Canola	cytosol	30.06	23.53
Bra020135.1-P	Field mustard	cytosol	30.06	23.53
Zm00001d020614_P001	Maize	cytosol, plastid	27.17	21.56
KRH19420	Soybean	nucleus	24.28	20.29
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	26.59	20.18
AT3G43440.1	Thale cress	cytosol	26.59	19.33
KRH02523	Soybean	cytosol	21.97	19.29
Zm00001d005813_P002	Maize	cytosol, plastid	24.86	18.94
Zm00001d022139_P001	Maize	plastid	24.86	18.45
Zm00001d006860_P001	Maize	plastid	23.7	15.41

Protein Annotations

EnsemblPlants:Zm00001d033972_P002	EnsemblPlants:Zm00001d033972_T002	EnsemblPlantsGene:Zm00001d033972	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom
PANTHER:PTHR33077	PANTHER:PTHR33077:SF5	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:ONM09062.1
SEG:seg	SMART:SM00979	UniParc:UPI00022169C0	UniProt:A0A1D6L3P2	MapMan:15.5.45	:

Description

Protein TIFY 3B

Coordinates

chr1:-:279900069..279901559

Molecular Weight (calculated)

17913.5 Da

IEP (calculated)

10.297

GRAVY (calculated)

-0.001

Length

173 amino acids

Sequence
(BLAST)

001: MLPMSNPSAN PTQLTIFYGG SVCVYDSVPP EKAQAIMLIA AAAAAAAATK GSAATAFNPP MVHTATVAPA AVFSPVLTRS PSLQSTSVAA GQAQVVADPS
101: SISKLQADLP IARRHSLQRF LEKRRDRVVS KAPYSPAKSF DGMESAGMEM TVDGKQGARP SILKGWGAAK SEV

Best Arabidopsis Sequence Match ( AT3G43440.1 )
(BLAST)

001: MAEVNGDFPV PSFADGTGSV SAGLDLLVER SIHEARSTEP DASTQLTIIF GGSCRVFNGV PAQKVQEIIR IAFAGKQTKN VTGINPALNR ALSFSTVADL
101: PIARRRSLQR FLEKRRDRST KPDGSMILPS QLTIIFGGSF SVFDGIPAEK VQEILHIAAA AKATETINLT SINPALKRAI SFSNASTVAC VSTADVPIAR
201: RRSLQRFFEK RRHRFVHTKP YSATTSEADK NETSPIVT

Arabidopsis Description

TIFY3AProtein TIFY 3A [Source:UniProtKB/Swiss-Prot;Acc:Q9M246]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.