Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98969 | Sorghum | cytosol | 61.23 | 62.9 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 54.63 | 56.88 |
| Os09t0439200-01 | Rice | plastid | 44.05 | 43.1 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 40.53 | 40.0 |
| TraesCS5B01G211000.1 | Wheat | nucleus | 40.53 | 40.0 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 32.16 | 34.27 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 32.6 | 32.74 |
| Zm00001d029448_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 31.28 | 31.14 |
| HORVU5Hr1G062290.6 | Barley | mitochondrion, plastid | 40.09 | 30.85 |
| TraesCS5A01G212800.1 | Wheat | plastid | 39.65 | 30.41 |
| GSMUA_Achr10P... | Banana | cytosol | 21.59 | 30.25 |
| PGSC0003DMT400075155 | Potato | nucleus | 28.63 | 30.23 |
| Solyc07g042170.2.1 | Tomato | cytosol | 28.63 | 30.09 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 32.6 | 29.96 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 31.72 | 29.88 |
| Zm00001d022139_P001 | Maize | plastid | 29.52 | 28.76 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 31.72 | 28.69 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 31.28 | 26.79 |
| Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 17.62 | 26.67 |
| Zm00001d006860_P001 | Maize | plastid | 30.4 | 25.94 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.75 | 25.51 |
| Solyc12g009220.1.1 | Tomato | nucleus | 28.19 | 25.4 |
| AT1G19180.1 | Thale cress | cytosol | 28.19 | 25.3 |
| PGSC0003DMT400007592 | Potato | nucleus | 28.19 | 25.2 |
| Bra008172.1-P | Field mustard | nucleus | 26.43 | 25.0 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 18.94 | 24.86 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 26.43 | 24.79 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 29.07 | 24.63 |
| CDY46022 | Canola | nucleus | 25.99 | 24.58 |
| CDY26697 | Canola | plastid | 26.87 | 24.11 |
| AT1G74950.1 | Thale cress | cytosol | 26.43 | 24.1 |
| CDX73127 | Canola | cytosol | 25.99 | 24.08 |
| Bra025713.1-P | Field mustard | plastid | 26.87 | 24.02 |
| CDY37269 | Canola | nucleus | 25.11 | 23.75 |
| Bra015880.1-P | Field mustard | cytosol | 25.55 | 23.67 |
| CDY45408 | Canola | cytosol | 25.55 | 23.67 |
| Bra016520.1-P | Field mustard | plastid | 26.87 | 23.55 |
| CDX85865 | Canola | cytosol | 22.91 | 23.21 |
| CDX83781 | Canola | plastid | 26.87 | 23.11 |
| Bra031065.1-P | Field mustard | plastid | 27.75 | 23.08 |
| Bra003778.1-P | Field mustard | cytosol | 22.47 | 22.97 |
| CDX73289 | Canola | cytosol | 18.94 | 22.87 |
| CDY41023 | Canola | plastid | 25.55 | 22.83 |
| CDX96675 | Canola | plastid | 26.43 | 22.81 |
| CDX68156 | Canola | cytosol | 17.18 | 21.55 |
| Zm00001d002029_P003 | Maize | nucleus | 19.82 | 20.83 |
| Zm00001d021924_P001 | Maize | plastid | 11.89 | 19.71 |
| Zm00001d046270_P001 | Maize | plastid | 11.89 | 19.71 |
| Zm00001d026477_P002 | Maize | nucleus | 17.62 | 17.39 |
| Zm00001d013855_P002 | Maize | plastid | 15.86 | 15.72 |
| CDX81917 | Canola | plastid | 27.75 | 12.4 |
| CDY21679 | Canola | plastid | 28.63 | 11.93 |
Protein Annotations
| EMBL:BT033298 | EMBL:HQ858791 | EMBL:KU512866 | EnsemblPlants:Zm00001d005813_P002 | EnsemblPlants:Zm00001d005813_T002 | EnsemblPlantsGene:Zm00001d005813 |
| EntrezGene:100191257 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF12 |
| PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:ONM22173.1 | SEG:seg | SMART:SM00979 |
| UniParc:UPI00017B6384 | UniProt:B4F860 | MapMan:15.5.45 | : | : | : |
Description
ZIM-transcription factor 13Protein TIFY 10B
Coordinates
chr2:-:189505960..189508316
Molecular Weight (calculated)
23966.3 Da
IEP (calculated)
5.737
GRAVY (calculated)
-0.437
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSAPATAM DKTSFATTCS LLSQYVKEKK GGLLQGLGAL AMAPAAGEGA FRPPTTMNLL SALDDAPAEE RSEKATAGEP KHQDKCTGGN PREEAAGEEE
101: EEAQQLTIFY GGRVVVFDMF PSAKVEDLLQ IMSPGGDGVD RAGGATVPTR SLHRPSHDSL SDLPIARRNS LHRFLEKRKD RITAKAPYQQ VNSSVVGVEA
201: SKQAAGAGVE KPWLGLGQEA TTAKLEM
101: EEAQQLTIFY GGRVVVFDMF PSAKVEDLLQ IMSPGGDGVD RAGGATVPTR SLHRPSHDSL SDLPIARRNS LHRFLEKRKD RITAKAPYQQ VNSSVVGVEA
201: SKQAAGAGVE KPWLGLGQEA TTAKLEM
001: MSSSNENAKA QAPEKSDFTR RCSLLSRYLK EKGSFGNIDL GLYRKPDSSL ALPGKFDPPG KQNAMHKAGH SKGEPSTSSG GKVKDVADLS ESQPGSSQLT
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL
Arabidopsis Description
TIFY11AProtein TIFY 11A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.