CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96675	Canola	plastid	95.45	95.82
CDY26697	Canola	plastid	66.29	69.17
CDY41023	Canola	plastid	65.53	68.11
CDX73289	Canola	cytosol	45.08	63.3
CDY37269	Canola	nucleus	46.59	51.25
CDY46022	Canola	nucleus	45.45	50.0
CDY45408	Canola	cytosol	45.45	48.98
CDX73127	Canola	cytosol	43.18	46.53
VIT_11s0016g00710.t01	Wine grape	cytosol, plastid	42.42	41.79
CDX85865	Canola	cytosol	34.47	40.62
CDX81917	Canola	plastid	75.38	39.17
Solyc07g042170.2.1	Tomato	cytosol	30.68	37.5
PGSC0003DMT400075155	Potato	nucleus	30.3	37.21
CDX68156	Canola	cytosol	25.38	37.02
CDY21679	Canola	plastid	71.21	34.5
GSMUA_Achr2P21770_001	Banana	mitochondrion	27.65	33.03
Solyc12g009220.1.1	Tomato	nucleus	31.44	32.94
Os07t0615200-01	Rice	mitochondrion	30.3	32.79
PGSC0003DMT400007592	Potato	nucleus	31.44	32.68
GSMUA_Achr6P31050_001	Banana	cytosol	25.76	31.92
TraesCS2B01G195600.1	Wheat	plastid	27.65	31.6
EER97533	Sorghum	plastid	28.03	31.49
Zm00001d022139_P001	Maize	plastid	27.65	31.33
TraesCS2D01G176800.1	Wheat	plastid	26.89	30.74
HORVU2Hr1G031310.9	Barley	cytosol, mitochondrion, plastid	27.65	30.54
EER92157	Sorghum	plastid	26.14	30.26
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	26.14	30.26
TraesCS2A01G169300.1	Wheat	plastid	25.76	29.44
GSMUA_Achr9P14370_001	Banana	cytosol	29.55	29.43
GSMUA_Achr3P02140_001	Banana	mitochondrion	23.11	29.19
GSMUA_Achr5P22110_001	Banana	mitochondrion	27.27	29.15
GSMUA_Achr3P05920_001	Banana	nucleus	27.65	29.08
Os03t0402800-01	Rice	plastid	25.0	28.95
EER98969	Sorghum	cytosol	23.86	28.51
TraesCS5B01G211000.1	Wheat	nucleus	24.62	28.26
TraesCS5D01G219300.2	Wheat	nucleus	24.62	28.26
GSMUA_Achr8P16780_001	Banana	cytosol	26.52	27.67
GSMUA_Achr11P...	Banana	cytosol	24.24	27.59
Os09t0439200-01	Rice	plastid	24.24	27.59
GSMUA_AchrUn_...	Banana	nucleus	25.76	27.53
Zm00001d006860_P001	Maize	plastid	27.65	27.44
GSMUA_Achr5P05170_001	Banana	cytosol, mitochondrion, nucleus	25.0	27.39
GSMUA_Achr7P19850_001	Banana	cytosol	25.0	27.27
Zm00001d005813_P002	Maize	cytosol, plastid	23.11	26.87
GSMUA_Achr3P10270_001	Banana	cytosol	22.73	26.55
GSMUA_Achr10P...	Banana	cytosol	15.91	25.93
Zm00001d020614_P001	Maize	cytosol, plastid	21.21	25.69
CDX96772	Canola	nucleus	25.0	24.72
CDY16574	Canola	cytoskeleton, cytosol, nucleus	18.56	24.62
CDY71173	Canola	nucleus	25.0	24.26
CDY09086	Canola	cytosol	19.32	23.08
CDX92427	Canola	cytosol	17.42	22.89
CDX72916	Canola	nucleus	23.11	22.51
GSMUA_Achr1P21870_001	Banana	mitochondrion	29.92	22.38
TraesCS5A01G212800.1	Wheat	plastid	25.0	22.3
CDY48300	Canola	cytosol, mitochondrion, nucleus, vacuole	24.24	22.07
CDY03638	Canola	nucleus	22.73	21.98
CDY71875	Canola	cytosol	18.56	21.78
HORVU5Hr1G062290.6	Barley	mitochondrion, plastid	24.24	21.69
CDX96409	Canola	nucleus	22.35	21.53
CDY26248	Canola	mitochondrion, nucleus	20.83	20.75
CDX81823	Canola	plastid	23.48	18.67

Protein Annotations

EnsemblPlants:CDX83781	EnsemblPlantsGene:GSBRNA2T00139525001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom	PANTHER:PTHR33077
PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:CDX83781	ProteinID:CDX83781.1	SEG:seg
SMART:SM00979	UniParc:UPI0004EE4288	MapMan:11.7.2.1.2	MapMan:15.5.45	:	:

Description

BnaC08g18640D

Coordinates

chrLK031834:-:420521..422227

Molecular Weight (calculated)

28744.1 Da

IEP (calculated)

10.222

GRAVY (calculated)

-0.469

Length

264 amino acids

Sequence
(BLAST)

001: MMSSSMDCSD SAATRRFSRK PSFSLTCSRL SQYLKENGSF GDLSLGMSCK PEVNGNSRQP TTTMSLFPCE AAPMATVQEV KPKNLFSRQP SFSSSSSSLP
101: KKEDVLKMTQ TTTTRSVRPE PQTAPLTIFY NGEVIVFNDF SAEKAKEVMY LASKGTANSF TGFTSTLNLP KNQTEVRTNI APTSNQVPHL MKPAAQEPIL
201: SSSAAMACEL PIARRASLHR FLAKRKDRVT SKAPYQLSDS AKASSKPQTG DNNTTSWLGL AAQI

Best Arabidopsis Sequence Match ( AT1G19180.1 )
(BLAST)

001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI

Arabidopsis Description

TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.