Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P31050_001 | Banana | cytosol | 41.32 | 46.95 |
| GSMUA_Achr10P... | Banana | cytosol | 28.51 | 42.59 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 39.26 | 37.85 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 38.02 | 34.72 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 33.88 | 34.02 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 30.17 | 33.03 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 33.47 | 32.79 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 30.58 | 32.74 |
| Solyc07g042170.2.1 | Tomato | cytosol | 28.93 | 32.41 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 28.51 | 31.65 |
| PGSC0003DMT400075155 | Potato | nucleus | 28.1 | 31.63 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 26.45 | 30.62 |
| CDY46022 | Canola | nucleus | 30.17 | 30.42 |
| GSMUA_Achr11P... | Banana | cytosol | 28.93 | 30.17 |
| Os09t0439200-01 | Rice | plastid | 28.93 | 30.17 |
| Bra008172.1-P | Field mustard | nucleus | 29.75 | 30.0 |
| CDY37269 | Canola | nucleus | 29.75 | 30.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.58 | 29.96 |
| PGSC0003DMT400007592 | Potato | nucleus | 30.17 | 28.74 |
| AT1G74950.1 | Thale cress | cytosol | 29.34 | 28.51 |
| Solyc12g009220.1.1 | Tomato | nucleus | 29.34 | 28.17 |
| EER98969 | Sorghum | cytosol | 25.62 | 28.05 |
| CDY45408 | Canola | cytosol | 28.1 | 27.76 |
| Bra015880.1-P | Field mustard | cytosol | 28.1 | 27.76 |
| CDY26697 | Canola | plastid | 28.93 | 27.67 |
| Bra025713.1-P | Field mustard | plastid | 28.93 | 27.56 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 25.62 | 26.96 |
| CDX73127 | Canola | cytosol | 27.27 | 26.94 |
| AT1G19180.1 | Thale cress | cytosol | 28.1 | 26.88 |
| CDY41023 | Canola | plastid | 28.1 | 26.77 |
| TraesCS5B01G211000.1 | Wheat | nucleus | 25.21 | 26.52 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 29.34 | 26.49 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 24.79 | 26.43 |
| CDX85865 | Canola | cytosol | 24.38 | 26.34 |
| Bra003778.1-P | Field mustard | cytosol | 23.55 | 25.68 |
| Bra016520.1-P | Field mustard | plastid | 27.27 | 25.48 |
| CDX96675 | Canola | plastid | 27.69 | 25.48 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 26.45 | 25.3 |
| CDX83781 | Canola | plastid | 27.27 | 25.0 |
| Bra031065.1-P | Field mustard | plastid | 27.69 | 24.54 |
| CDX68156 | Canola | cytosol | 17.77 | 23.76 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 33.06 | 22.66 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 14.05 | 21.94 |
| GSMUA_Achr10P... | Banana | cytosol | 15.7 | 21.47 |
| TraesCS5A01G212800.1 | Wheat | plastid | 25.62 | 20.95 |
| CDX73289 | Canola | cytosol | 16.12 | 20.74 |
| HORVU5Hr1G062290.6 | Barley | mitochondrion, plastid | 24.79 | 20.34 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 13.64 | 20.12 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 14.88 | 19.46 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 17.77 | 18.86 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 16.53 | 18.26 |
| CDX81917 | Canola | plastid | 27.27 | 12.99 |
| CDY21679 | Canola | plastid | 28.1 | 12.48 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P19850_001 | EnsemblPlants:GSMUA_Achr7T19850_001 | EnsemblPlantsGene:GSMUA_Achr7G19850_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF12 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg |
| SMART:SM00979 | UniParc:UPI0002967CD1 | UniProt:M0TJ22 | MapMan:15.5.45 | : | : |
Description
Putative Protein TIFY 10A [Source:GMGC_GENE;Acc:GSMUA_Achr7G19850_001]
Coordinates
chr7:-:22883832..22884955
Molecular Weight (calculated)
26080.7 Da
IEP (calculated)
8.489
GRAVY (calculated)
-0.626
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKGGERLVG RSHFSLTCRL LSQYLKKNGS FGDLGLLLAP RPIDHQAKGN FWVPNTICFK PGNEVSGMDH HHADKSTDKN ASNSPELMVS QHSISLNSSA
101: IPRTEESTKP SDAKEIGKDQ LTIFYGGQIL VFDNFPADKA KDLLLMASKE SIADPAADCT SNEPAVALQS SLPEPGQANS SDMPIARRNS LNRFLGKRKD
201: RMGQAPYQVH GGSAGPAAAK PAENQPWLSL GPKPESSSQS SR
101: IPRTEESTKP SDAKEIGKDQ LTIFYGGQIL VFDNFPADKA KDLLLMASKE SIADPAADCT SNEPAVALQS SLPEPGQANS SDMPIARRNS LNRFLGKRKD
201: RMGQAPYQVH GGSAGPAAAK PAENQPWLSL GPKPESSSQS SR
001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
Arabidopsis Description
TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.