Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P14370_001 | Banana | cytosol | 58.57 | 55.47 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 47.01 | 48.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.81 | 48.58 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 39.44 | 46.48 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 42.63 | 43.32 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 37.05 | 41.15 |
| GSMUA_Achr10P... | Banana | cytosol | 25.9 | 40.12 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 37.85 | 39.26 |
| Solyc07g042170.2.1 | Tomato | cytosol | 32.67 | 37.96 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 33.07 | 37.56 |
| PGSC0003DMT400075155 | Potato | nucleus | 31.47 | 36.74 |
| EER98969 | Sorghum | cytosol | 32.27 | 36.65 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 29.08 | 34.93 |
| Solyc12g009220.1.1 | Tomato | nucleus | 33.86 | 33.73 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 30.28 | 33.04 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 28.69 | 33.03 |
| PGSC0003DMT400007592 | Potato | nucleus | 33.07 | 32.68 |
| CDY46022 | Canola | nucleus | 31.08 | 32.5 |
| GSMUA_Achr11P... | Banana | cytosol | 29.88 | 32.33 |
| TraesCS5B01G211000.1 | Wheat | nucleus | 29.48 | 32.17 |
| Bra008172.1-P | Field mustard | nucleus | 30.68 | 32.08 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 28.69 | 31.72 |
| CDY37269 | Canola | nucleus | 30.28 | 31.67 |
| CDX73127 | Canola | cytosol | 30.68 | 31.43 |
| CDY45408 | Canola | cytosol | 30.28 | 31.02 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 31.08 | 30.83 |
| Bra015880.1-P | Field mustard | cytosol | 29.88 | 30.61 |
| AT1G74950.1 | Thale cress | cytosol | 30.28 | 30.52 |
| CDY41023 | Canola | plastid | 30.68 | 30.32 |
| CDY26697 | Canola | plastid | 30.28 | 30.04 |
| Bra025713.1-P | Field mustard | plastid | 29.88 | 29.53 |
| Os09t0439200-01 | Rice | plastid | 26.69 | 28.88 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 30.68 | 28.73 |
| CDX85865 | Canola | cytosol | 25.5 | 28.57 |
| Bra016520.1-P | Field mustard | plastid | 29.48 | 28.57 |
| AT1G19180.1 | Thale cress | cytosol | 28.69 | 28.46 |
| Bra003778.1-P | Field mustard | cytosol | 25.1 | 28.38 |
| CDX96675 | Canola | plastid | 29.08 | 27.76 |
| CDX83781 | Canola | plastid | 29.08 | 27.65 |
| CDX68156 | Canola | cytosol | 19.92 | 27.62 |
| CDX73289 | Canola | cytosol | 20.32 | 27.13 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 37.85 | 26.91 |
| Bra031065.1-P | Field mustard | plastid | 28.69 | 26.37 |
| HORVU5Hr1G062290.6 | Barley | mitochondrion, plastid | 30.28 | 25.76 |
| TraesCS5A01G212800.1 | Wheat | plastid | 29.88 | 25.34 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 14.74 | 23.87 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 19.52 | 22.37 |
| GSMUA_Achr10P... | Banana | cytosol | 15.54 | 22.03 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 19.92 | 21.93 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 15.54 | 21.08 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 11.95 | 18.29 |
| CDX81917 | Canola | plastid | 29.48 | 14.57 |
| CDY21679 | Canola | plastid | 29.88 | 13.76 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P05920_001 | EnsemblPlants:GSMUA_Achr3T05920_001 | EnsemblPlantsGene:GSMUA_Achr3G05920_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF19 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg |
| SMART:SM00979 | UniParc:UPI000295587A | UniProt:M0SC60 | MapMan:11.7.2.1.2 | MapMan:15.5.45 | : |
Description
Putative Protein TIFY 10B [Source:GMGC_GENE;Acc:GSMUA_Achr3G05920_001]
Coordinates
chr3:-:3980465..3981981
Molecular Weight (calculated)
26978.8 Da
IEP (calculated)
9.352
GRAVY (calculated)
-0.796
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSKGEKSN FNETCRLLSQ YLKEKGGLGG LGLEMTPKAL DQQGKGKSPA PATMSLLPGV DVPGEDQTSP KSMDLFPHKS GLDSGALAME EPGKKTSDIK
101: KMEKGQLTIF YGGKVLVFDD FPAEKAEDLM QMAAKESVAP QNLSFSTHHS STARADGPRS AGSPATPAPA DSLSKANASD MPIARRNSLH RFLEKRKDRI
201: STKAPYQVHG SSASMEEGKP ESWLNLGRQT PQPEQSSESS KRQTYGCVGH N
101: KMEKGQLTIF YGGKVLVFDD FPAEKAEDLM QMAAKESVAP QNLSFSTHHS STARADGPRS AGSPATPAPA DSLSKANASD MPIARRNSLH RFLEKRKDRI
201: STKAPYQVHG SSASMEEGKP ESWLNLGRQT PQPEQSSESS KRQTYGCVGH N
001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
Arabidopsis Description
TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.