Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96675 | Canola | plastid | 64.36 | 46.01 |
| CDX83781 | Canola | plastid | 63.3 | 45.08 |
| CDY41023 | Canola | plastid | 46.81 | 34.65 |
| CDY26697 | Canola | plastid | 46.28 | 34.39 |
| CDX68156 | Canola | cytosol | 30.32 | 31.49 |
| CDY45408 | Canola | cytosol | 36.7 | 28.16 |
| CDX85865 | Canola | cytosol | 33.51 | 28.12 |
| CDY37269 | Canola | nucleus | 34.04 | 26.67 |
| CDX73127 | Canola | cytosol | 34.04 | 26.12 |
| CDY46022 | Canola | nucleus | 32.45 | 25.42 |
| GSMUA_Achr10P... | Banana | cytosol | 21.81 | 25.31 |
| TraesCS2A01G169300.1 | Wheat | plastid | 29.79 | 24.24 |
| EER92157 | Sorghum | plastid | 29.26 | 24.12 |
| TraesCS2B01G195600.1 | Wheat | plastid | 29.26 | 23.81 |
| PGSC0003DMT400075155 | Potato | nucleus | 27.13 | 23.72 |
| Zm00001d029448_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 28.72 | 23.68 |
| Solyc07g042170.2.1 | Tomato | cytosol | 27.13 | 23.61 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 33.51 | 23.51 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 26.06 | 23.45 |
| TraesCS2D01G176800.1 | Wheat | plastid | 28.72 | 23.38 |
| Os03t0402800-01 | Rice | plastid | 27.66 | 22.81 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 30.32 | 22.53 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 23.4 | 22.11 |
| HORVU2Hr1G031310.9 | Barley | cytosol, mitochondrion, plastid | 27.66 | 21.76 |
| Os07t0615200-01 | Rice | mitochondrion | 28.19 | 21.72 |
| CDX92427 | Canola | cytosol | 22.34 | 20.9 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 25.53 | 20.87 |
| TraesCS5B01G211000.1 | Wheat | nucleus | 25.53 | 20.87 |
| EER97533 | Sorghum | plastid | 26.06 | 20.85 |
| Zm00001d022139_P001 | Maize | plastid | 25.53 | 20.6 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 28.72 | 20.38 |
| EER98969 | Sorghum | cytosol | 23.94 | 20.36 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 27.13 | 20.32 |
| GSMUA_Achr11P... | Banana | cytosol | 25.0 | 20.26 |
| Solyc12g009220.1.1 | Tomato | nucleus | 27.13 | 20.24 |
| PGSC0003DMT400007592 | Potato | nucleus | 27.13 | 20.08 |
| CDX81917 | Canola | plastid | 54.26 | 20.08 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 25.53 | 19.92 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 22.87 | 19.46 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 22.34 | 19.27 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 21.81 | 19.25 |
| CDY09086 | Canola | cytosol | 22.34 | 19.0 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 22.87 | 18.94 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 24.47 | 18.62 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 22.34 | 18.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.94 | 18.22 |
| Os09t0439200-01 | Rice | plastid | 22.34 | 18.1 |
| Zm00001d006860_P001 | Maize | plastid | 25.53 | 18.05 |
| CDY71875 | Canola | cytosol | 21.28 | 17.78 |
| CDY21679 | Canola | plastid | 51.06 | 17.61 |
| CDX96772 | Canola | nucleus | 24.47 | 17.23 |
| CDY71173 | Canola | nucleus | 23.94 | 16.54 |
| CDY26248 | Canola | mitochondrion, nucleus | 22.87 | 16.23 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 20.74 | 16.12 |
| HORVU5Hr1G062290.6 | Barley | mitochondrion, plastid | 25.0 | 15.93 |
| TraesCS5A01G212800.1 | Wheat | plastid | 25.0 | 15.88 |
| CDY03638 | Canola | nucleus | 22.87 | 15.75 |
| CDY48300 | Canola | cytosol, mitochondrion, nucleus, vacuole | 23.4 | 15.17 |
| CDX72916 | Canola | nucleus | 21.28 | 14.76 |
| CDX96409 | Canola | nucleus | 19.68 | 13.5 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 25.0 | 13.31 |
| CDX81823 | Canola | plastid | 23.4 | 13.25 |
Protein Annotations
| EnsemblPlants:CDX73289 | EnsemblPlantsGene:GSBRNA2T00106360001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDX73289 | ProteinID:CDX73289.1 |
| SEG:seg | SMART:SM00979 | UniParc:UPI0004EE56EC | MapMan:11.7.2.1.2 | MapMan:15.5.45 | : |
Description
BnaC05g28170D
Coordinates
chrLK031798:+:1005119..1006300
Molecular Weight (calculated)
20523.6 Da
IEP (calculated)
10.000
GRAVY (calculated)
-0.272
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCKPEVNDF AGNSRQPTTA MKDVLKMTQT TTTRYPQTAP LTILYNGEVI VFNDFSAEKA KEVMDLASKG TANTFTGFTC TVNLPKSQTE VRTNIAPTSN
101: QVPHLIKTAT QEPIMSSSAA MACFLTNILS FLTELPIARR ASLHRFLAKR KDRVTSKAPY QLSDPAKASS KTQTGDNTIS WLGLAAQI
101: QVPHLIKTAT QEPIMSSSAA MACFLTNILS FLTELPIARR ASLHRFLAKR KDRVTSKAPY QLSDPAKASS KTQTGDNTIS WLGLAAQI
001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
Arabidopsis Description
TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.