CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73261
CDX74819
CDX84081
CDX92171
CDX93223
CDX93225
CDX95810
CDY07040
CDY07041
CDY20501
CDY24941
CDY26910
CDY60996

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74950.1	CDX73261	AT1G32640.1	19309455
AT1G74950.1	CDX84081	AT1G32640.1	19309455
AT1G74950.1	CDY26910	AT1G32640.1	19309455
AT1G74950.1	CDX74819	AT2G39940.1	18547396
AT1G74950.1	CDX93223	AT2G39940.1	18547396
AT1G74950.1	CDX93225	AT2G39940.1	18547396
AT1G74950.1	CDY07040	AT2G39940.1	18547396
AT1G74950.1	CDY07041	AT2G39940.1	18547396
AT1G74950.1	CDY20501	AT2G39940.1	18547396
AT1G74950.1	CDY24941	AT2G39940.1	18547396
AT1G74950.1	CDY60996	AT2G39940.1	18547396
AT1G74950.1	CDX92171	AT3G17860.1	19309455
AT1G74950.1	CDX95810	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46022	Canola	nucleus	82.92	82.92
CDX73127	Canola	cytosol	65.83	64.49
CDY45408	Canola	cytosol	63.33	62.04
AT1G74950.1	Thale cress	cytosol	62.92	60.64
CDX85865	Canola	cytosol	49.17	52.68
CDY26697	Canola	plastid	54.17	51.38
CDY41023	Canola	plastid	54.17	51.18
CDX96675	Canola	plastid	52.5	47.91
CDX68156	Canola	cytosol	35.83	47.51
CDX83781	Canola	plastid	51.25	46.59
Solyc07g042170.2.1	Tomato	cytosol	35.42	39.35
PGSC0003DMT400075155	Potato	nucleus	34.58	38.6
VIT_11s0016g00710.t01	Wine grape	cytosol, plastid	42.08	37.69
GSMUA_Achr2P21770_001	Banana	mitochondrion	32.5	35.29
CDX73289	Canola	cytosol	26.67	34.04
Zm00001d022139_P001	Maize	plastid	32.92	33.91
GSMUA_Achr6P31050_001	Banana	cytosol	29.58	33.33
EER97533	Sorghum	plastid	31.67	32.34
PGSC0003DMT400007592	Potato	nucleus	33.75	31.89
Solyc12g009220.1.1	Tomato	nucleus	32.92	31.35
GSMUA_Achr5P22110_001	Banana	mitochondrion	32.08	31.17
GSMUA_Achr9P14370_001	Banana	cytosol	34.17	30.94
GSMUA_Achr5P05170_001	Banana	cytosol, mitochondrion, nucleus	30.83	30.71
TraesCS2B01G195600.1	Wheat	plastid	29.17	30.3
TraesCS2D01G176800.1	Wheat	plastid	29.17	30.3
GSMUA_Achr3P05920_001	Banana	nucleus	31.67	30.28
GSMUA_Achr7P19850_001	Banana	cytosol	30.0	29.75
HORVU2Hr1G031310.9	Barley	cytosol, mitochondrion, plastid	29.58	29.71
Os07t0615200-01	Rice	mitochondrion	30.0	29.51
Os03t0402800-01	Rice	plastid	27.5	28.95
GSMUA_Achr8P16780_001	Banana	cytosol	30.42	28.85
GSMUA_Achr3P02140_001	Banana	mitochondrion	25.0	28.71
EER92157	Sorghum	plastid	27.08	28.51
GSMUA_AchrUn_...	Banana	nucleus	29.17	28.34
Zm00001d006860_P001	Maize	plastid	31.25	28.2
TraesCS2A01G169300.1	Wheat	plastid	27.08	28.14
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	26.67	28.07
EER98969	Sorghum	cytosol	25.83	28.05
TraesCS5D01G219300.2	Wheat	nucleus	26.67	27.83
GSMUA_Achr10P...	Banana	cytosol	18.75	27.78
GSMUA_Achr11P...	Banana	cytosol	26.67	27.59
GSMUA_Achr3P10270_001	Banana	cytosol	25.42	26.99
TraesCS5B01G211000.1	Wheat	nucleus	25.42	26.52
Os09t0439200-01	Rice	plastid	24.58	25.43
Zm00001d020614_P001	Maize	cytosol, plastid	22.92	25.23
Zm00001d005813_P002	Maize	cytosol, plastid	23.75	25.11
CDX96772	Canola	nucleus	27.5	24.72
CDX81917	Canola	plastid	52.08	24.61
CDY16574	Canola	cytoskeleton, cytosol, nucleus	19.58	23.62
CDY21679	Canola	plastid	53.33	23.49
CDX92427	Canola	cytosol	19.58	23.38
CDY71173	Canola	nucleus	25.42	22.43
TraesCS5A01G212800.1	Wheat	plastid	27.5	22.3
CDY03638	Canola	nucleus	25.0	21.98
HORVU5Hr1G062290.6	Barley	mitochondrion, plastid	26.67	21.69
CDY48300	Canola	cytosol, mitochondrion, nucleus, vacuole	25.83	21.38
CDY09086	Canola	cytosol	19.58	21.27
GSMUA_Achr1P21870_001	Banana	mitochondrion	30.83	20.96
CDY71875	Canola	cytosol	19.58	20.89
CDY26248	Canola	mitochondrion, nucleus	22.92	20.75
CDX72916	Canola	nucleus	22.92	20.3
CDX96409	Canola	nucleus	22.92	20.07
CDX81823	Canola	plastid	26.67	19.28

Protein Annotations

EnsemblPlants:CDY37269	EnsemblPlantsGene:GSBRNA2T00063778001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom	PANTHER:PTHR33077
PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:CDY37269	ProteinID:CDY37269.1	SEG:seg
SMART:SM00979	UniParc:UPI0004EDBB6F	UniProt:A0A078HIU6	MapMan:11.7.2.1.2	MapMan:15.5.45	:

Description

BnaCnng08230DBnaCnng08230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIU6]

Coordinates

chrLK032396:+:266388..268147

Molecular Weight (calculated)

26204.9 Da

IEP (calculated)

9.750

GRAVY (calculated)

-0.577

Length

240 amino acids

Sequence
(BLAST)

001: MSSSAEYREF SGRKLQKKPS FSQTCSRLSR YLKEKGSFGD LSLGMTCNPD VTGVFAVSRQ PTMMNLFPCE EASPTQDVKP THKVPRQSSF SSSSSSGAKG
101: EVEKIIEIKS VKVESQSSPL TIFYGGQVMV FDDFPAEKAK QVIDLANKGS DYTQNIAKNQ KEIASSTPNP VPSPAKTAAA SELVQTNTSS LACELPIARR
201: ASLHRFLEKR KDRITSKAPY QLDGSTEASS KPNTFWLGSQ

Best Arabidopsis Sequence Match ( AT1G74950.1 )
(BLAST)

001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR

Arabidopsis Description

TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.