Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07041 | Canola | cytosol | 93.91 | 93.75 |
| CDX93225 | Canola | cytosol | 90.86 | 90.4 |
| CDY07040 | Canola | cytosol | 89.34 | 86.99 |
| CDX74819 | Canola | cytosol | 82.57 | 81.33 |
| CDY24941 | Canola | cytosol | 81.05 | 81.19 |
| CDY20501 | Canola | cytosol | 82.23 | 80.73 |
| AT2G39940.1 | Thale cress | cytosol | 79.7 | 79.56 |
| CDY60996 | Canola | endoplasmic reticulum, golgi | 81.39 | 68.42 |
| KRH14993 | Soybean | cytosol | 62.77 | 65.32 |
| KRH73146 | Soybean | cytosol | 63.96 | 64.73 |
| KRH31107 | Soybean | cytosol | 64.47 | 64.58 |
| VIT_13s0019g03380.t01 | Wine grape | cytosol | 65.31 | 64.55 |
| KRG97777 | Soybean | cytosol | 64.13 | 64.24 |
| Solyc05g052620.2.1 | Tomato | cytosol | 64.81 | 63.52 |
| GSMUA_Achr6P33630_001 | Banana | cytosol, mitochondrion, nucleus | 58.54 | 59.35 |
| GSMUA_Achr5P28930_001 | Banana | cytosol | 56.01 | 59.11 |
| GSMUA_Achr9P03690_001 | Banana | cytosol | 59.05 | 57.88 |
| Zm00001d042833_P001 | Maize | cytosol | 55.67 | 55.02 |
| Os01t0853400-01 | Rice | cytosol | 55.16 | 54.79 |
| GSMUA_Achr8P02350_001 | Banana | cytosol | 15.91 | 54.65 |
| Os05t0449500-01 | Rice | cytosol | 54.99 | 54.44 |
| Zm00001d012338_P001 | Maize | cytosol | 54.82 | 54.36 |
| EES18318 | Sorghum | cytosol | 54.82 | 54.09 |
| HORVU3Hr1G085210.2 | Barley | cytosol | 54.31 | 54.04 |
| TraesCS3B01G399200.1 | Wheat | cytosol | 53.98 | 53.7 |
| TraesCS3A01G367500.1 | Wheat | cytosol | 50.59 | 53.68 |
| TraesCS3D01G360400.2 | Wheat | cytosol | 53.98 | 53.61 |
| EES01769 | Sorghum | cytosol | 53.98 | 53.52 |
| Zm00001d038273_P001 | Maize | cytosol | 54.15 | 53.42 |
| Zm00001d010082_P001 | Maize | cytosol | 54.15 | 53.42 |
| HORVU4Hr1G060950.3 | Barley | cytosol | 52.79 | 53.24 |
| HORVU1Hr1G073230.1 | Barley | cytosol | 53.13 | 53.13 |
| TraesCS1D01G278400.1 | Wheat | cytosol | 53.13 | 53.04 |
| TraesCS1B01G288100.1 | Wheat | cytosol | 52.79 | 52.7 |
| TraesCS4A01G091200.1 | Wheat | cytosol | 52.12 | 52.56 |
| TraesCS4D01G214200.1 | Wheat | cytosol | 52.12 | 52.56 |
| TraesCS1A01G279100.1 | Wheat | cytosol | 52.62 | 52.53 |
| TraesCS4B01G213500.1 | Wheat | cytosol | 51.95 | 52.39 |
| Os03t0265500-01 | Rice | plasma membrane | 52.12 | 52.29 |
| EER95129 | Sorghum | cytosol | 50.76 | 50.76 |
| Zm00001d028543_P001 | Maize | cytosol | 50.42 | 50.42 |
| Zm00001d047848_P001 | Maize | cytosol | 50.42 | 50.42 |
| CDY68868 | Canola | cytosol | 29.61 | 32.41 |
| CDY53998 | Canola | cytosol | 30.63 | 30.99 |
| CDY34211 | Canola | cytosol | 30.12 | 30.96 |
| CDY28523 | Canola | cytosol | 29.95 | 30.78 |
| CDX71968 | Canola | cytosol | 29.95 | 30.62 |
| CDY26594 | Canola | cytosol | 29.95 | 30.62 |
| CDY16034 | Canola | cytosol | 29.95 | 30.57 |
| CDY53774 | Canola | cytosol | 29.78 | 30.03 |
| CDY31282 | Canola | cytosol | 29.78 | 29.98 |
| CDY11468 | Canola | cytosol | 30.12 | 29.92 |
| CDY21068 | Canola | cytosol | 29.78 | 29.83 |
| CDX76680 | Canola | cytosol | 29.95 | 29.75 |
| CDX90899 | Canola | cytosol | 29.27 | 29.52 |
| CDX97301 | Canola | cytosol | 4.4 | 28.26 |
| CDX67912 | Canola | endoplasmic reticulum, golgi | 30.63 | 28.06 |
| CDY03450 | Canola | cytosol | 28.93 | 28.03 |
| CDY34286 | Canola | cytosol | 28.76 | 27.91 |
| CDY21439 | Canola | cytosol | 28.43 | 27.81 |
| CDX83172 | Canola | cytosol, plastid | 28.43 | 27.68 |
| CDX89163 | Canola | cytosol | 28.93 | 27.32 |
| CDY21947 | Canola | plastid, vacuole | 28.43 | 26.84 |
| CDY22108 | Canola | endoplasmic reticulum, golgi, plastid, vacuole | 28.6 | 26.45 |
Protein Annotations
| EnsemblPlants:CDX93223 | EnsemblPlantsGene:GSBRNA2T00155179001 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR43944 | PANTHER:PTHR43944:SF6 | ProteinID:CDX93223 | ProteinID:CDX93223.1 | SUPFAM:SSF52047 | UniParc:UPI0004EDE04E |
| MapMan:11.7.2.1.1 | : | : | : | : | : |
Description
BnaC04g46730D
Coordinates
chrLK031875:+:423132..425713
Molecular Weight (calculated)
67379.0 Da
IEP (calculated)
7.151
GRAVY (calculated)
-0.211
Length
591 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPDNKKLR STPRNADDVI SIVMPYVTDP KDRESASLVN RTWLRADSET RDHVTMALCY ASAPDRLARR FPNLRSLKLK GKPRAAMFNL IPDNWGGFVT
101: PWVNEIALSL RRIRSVHFRR MIVRDLDLDV LARARGDELE VLKLDKCLGF STDGLLSVVK HCRNIKTLVM EESSFLEKDG NWLHELALHN TSLEVLNLYM
201: TELTKLSPRD LETIARNCHR SLVSVKVGDV EVLELLGFFK AAVNLEEFCG GALDEDPETP DKYIKLTFPP KLSRLGLTYL GANEMPMIFP FAAQIRKLDL
301: LFAFLGTDDH CKLIQKCPNL EVLETRNVIG DKGLEVLAQC CKQLKRLRIE QGADEEGMMD ERWGFVTQRG LTALAQGCQE LEYMAVYVTD ITNESLRTIG
401: AYLKNLSDFR LVLLDQEERI RDLPLDNGVR SLLIGCEKLR RFAFYLRPGG LTDVGLRYIG QYSLNVRWML LGYVGETDEG LMEFSKGCPK LQKLEMRGCC
501: FSERAIAAAV MKLPSLRYLW VQGYRESVTG QDLRVMSRPN WNIELIPARR VPEVNLGDVR EMEHPAHILA YYSLAGQRTD CPPTVRVLRE L
101: PWVNEIALSL RRIRSVHFRR MIVRDLDLDV LARARGDELE VLKLDKCLGF STDGLLSVVK HCRNIKTLVM EESSFLEKDG NWLHELALHN TSLEVLNLYM
201: TELTKLSPRD LETIARNCHR SLVSVKVGDV EVLELLGFFK AAVNLEEFCG GALDEDPETP DKYIKLTFPP KLSRLGLTYL GANEMPMIFP FAAQIRKLDL
301: LFAFLGTDDH CKLIQKCPNL EVLETRNVIG DKGLEVLAQC CKQLKRLRIE QGADEEGMMD ERWGFVTQRG LTALAQGCQE LEYMAVYVTD ITNESLRTIG
401: AYLKNLSDFR LVLLDQEERI RDLPLDNGVR SLLIGCEKLR RFAFYLRPGG LTDVGLRYIG QYSLNVRWML LGYVGETDEG LMEFSKGCPK LQKLEMRGCC
501: FSERAIAAAV MKLPSLRYLW VQGYRESVTG QDLRVMSRPN WNIELIPARR VPEVNLGDVR EMEHPAHILA YYSLAGQRTD CPPTVRVLRE L
001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
Arabidopsis Description
COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.